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The map label for this gene is ybhS [H]

Identifier: 78224648

GI number: 78224648

Start: 3876180

End: 3877289

Strand: Reverse

Name: ybhS [H]

Synonym: Gmet_3461

Alternate gene names: 78224648

Gene position: 3877289-3876180 (Counterclockwise)

Preceding gene: 78224649

Following gene: 78224647

Centisome position: 96.99

GC content: 63.33

Gene sequence:

>1110_bases
ATGAAACTCTCTCGCATCCGCGCCATAGCCAAGAAAGAGCTGATCCAGGTTATCCGCGACCCCCTGAGCCTCGCCATGGC
GTTTCTCATGCCGGTGATCCTCCTCTTCATCTTCGGCTACGCCATCACCATGGACGTGAACAACCTGCGCACCGTGGTCT
ACGACCTGGACCGAAGCTCCCTGAGCCGGGAGCTCGTGTCCCAGTTCCGGGAGTCGGGGTATTTCACCATTGTCGCCACC
CTGGAGCAAGGCGGCGACATCGACGCCGCCCTGGACGCGAACCGGGGACAGGTGGCGCTCTGGATCCCGGAGGATTTCTC
CGAGAACCTTCGGCGGGGGAAAAGCGCCCCGCTCCAGGTGGTGGTGGACGGAAGCGATTCCAACACCGCCACCATCGCCC
TGGGCTACGTGGAGGCGGTTGCGGAGCGCTTCAGTCAGCGGACTTCGGGAGGGCTCGCGACCCCCACCATCGATCCCCGG
GTGCGGGTCTGGTACAACCCGGAGCTGAAGTCCCGCAACTACATCATTCCCGGCCTCATCGCGGTGATCATGGCGGTCAT
CGCCGCCCTTCTCACCTCCCTCACCATCGCCCGGGAGTGGGAGCGGGGGACCATGGAGCAGTTGATCGCCACCCCGGTAA
AGCCCACCGAGCTGATCGCCGGAAAGCTCATCCCCTACTTTTTCATCGGTTTCATCGACGTGGCCCTCTCGGTGGCCATG
GCGACGCTCATCTTCGACGTTCCGTTGCGGGGGAGCCTCCTTCTTCTCGCCCTCCTCTCCTCGCTCTTCCTCTTCGGCGG
ACTCTCCCTGGGAATTCTCATCTCCGTGGTCGCCAGGTCCCAGCTTGTGGCGAGCCAGATCGCCATGGTGGTGAGCTTTC
TCCCCGCCTTCCTCCTCTCCGGGTTCATGTACGCCATCGCCAACATGCCGACGCCGCTGCGGAACGTGACCCGGGTCATC
CCGGCCCGCTACTTCGTCTCGATCCTCAAGGGGATCTTCCTCAAGGGGAGCACCCTCCGGCTCCTGGCGGCGGAAACCGC
CCTCCTCGCCCTCTTCGGCGTGGTGGTCTTCATCCTGTCGGTCAGAAAATTCAGGAAAAGGATCGTGTGA

Upstream 100 bases:

>100_bases
TGCCGTCGCTGGAGGATGTGTTCGTGACGTTGATCGAGACGTCGTGAACAATGCTTGCAAAGTCCCCCTTTAAAAAAGGG
GGGAGCAAAGGACTATCGCC

Downstream 100 bases:

>100_bases
GATGTTCGAACGGATAAGAGAGATGGTAATCAAGGAGTTCAGCCAGGTCTTCCGGGACCGGCGGATGAAGGCGATCATCT
TCGTCACCCCCATCCTGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MKLSRIRAIAKKELIQVIRDPLSLAMAFLMPVILLFIFGYAITMDVNNLRTVVYDLDRSSLSRELVSQFRESGYFTIVAT
LEQGGDIDAALDANRGQVALWIPEDFSENLRRGKSAPLQVVVDGSDSNTATIALGYVEAVAERFSQRTSGGLATPTIDPR
VRVWYNPELKSRNYIIPGLIAVIMAVIAALLTSLTIAREWERGTMEQLIATPVKPTELIAGKLIPYFFIGFIDVALSVAM
ATLIFDVPLRGSLLLLALLSSLFLFGGLSLGILISVVARSQLVASQIAMVVSFLPAFLLSGFMYAIANMPTPLRNVTRVI
PARYFVSILKGIFLKGSTLRLLAAETALLALFGVVVFILSVRKFRKRIV

Sequences:

>Translated_369_residues
MKLSRIRAIAKKELIQVIRDPLSLAMAFLMPVILLFIFGYAITMDVNNLRTVVYDLDRSSLSRELVSQFRESGYFTIVAT
LEQGGDIDAALDANRGQVALWIPEDFSENLRRGKSAPLQVVVDGSDSNTATIALGYVEAVAERFSQRTSGGLATPTIDPR
VRVWYNPELKSRNYIIPGLIAVIMAVIAALLTSLTIAREWERGTMEQLIATPVKPTELIAGKLIPYFFIGFIDVALSVAM
ATLIFDVPLRGSLLLLALLSSLFLFGGLSLGILISVVARSQLVASQIAMVVSFLPAFLLSGFMYAIANMPTPLRNVTRVI
PARYFVSILKGIFLKGSTLRLLAAETALLALFGVVVFILSVRKFRKRIV
>Mature_369_residues
MKLSRIRAIAKKELIQVIRDPLSLAMAFLMPVILLFIFGYAITMDVNNLRTVVYDLDRSSLSRELVSQFRESGYFTIVAT
LEQGGDIDAALDANRGQVALWIPEDFSENLRRGKSAPLQVVVDGSDSNTATIALGYVEAVAERFSQRTSGGLATPTIDPR
VRVWYNPELKSRNYIIPGLIAVIMAVIAALLTSLTIAREWERGTMEQLIATPVKPTELIAGKLIPYFFIGFIDVALSVAM
ATLIFDVPLRGSLLLLALLSSLFLFGGLSLGILISVVARSQLVASQIAMVVSFLPAFLLSGFMYAIANMPTPLRNVTRVI
PARYFVSILKGIFLKGSTLRLLAAETALLALFGVVVFILSVRKFRKRIV

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787011, Length=338, Percent_Identity=43.7869822485207, Blast_Score=277, Evalue=8e-76,
Organism=Escherichia coli, GI1787010, Length=341, Percent_Identity=31.9648093841642, Blast_Score=198, Evalue=5e-52,
Organism=Escherichia coli, GI48994943, Length=338, Percent_Identity=31.0650887573964, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI226510979, Length=323, Percent_Identity=27.2445820433437, Blast_Score=110, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24650855, Length=368, Percent_Identity=25, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24650853, Length=368, Percent_Identity=25, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24582014, Length=413, Percent_Identity=21.3075060532688, Blast_Score=69, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24582012, Length=413, Percent_Identity=21.3075060532688, Blast_Score=69, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 40488; Mature: 40488

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSRIRAIAKKELIQVIRDPLSLAMAFLMPVILLFIFGYAITMDVNNLRTVVYDLDRSS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHCCHHH
LSRELVSQFRESGYFTIVATLEQGGDIDAALDANRGQVALWIPEDFSENLRRGKSAPLQV
HHHHHHHHHHHCCCEEEEEEECCCCCCCEEECCCCCEEEEECCCHHHHHHHCCCCCCEEE
VVDGSDSNTATIALGYVEAVAERFSQRTSGGLATPTIDPRVRVWYNPELKSRNYIIPGLI
EEECCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHH
AVIMAVIAALLTSLTIAREWERGTMEQLIATPVKPTELIAGKLIPYFFIGFIDVALSVAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ATLIFDVPLRGSLLLLALLSSLFLFGGLSLGILISVVARSQLVASQIAMVVSFLPAFLLS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFMYAIANMPTPLRNVTRVIPARYFVSILKGIFLKGSTLRLLAAETALLALFGVVVFILS
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
VRKFRKRIV
HHHHHHHCC
>Mature Secondary Structure
MKLSRIRAIAKKELIQVIRDPLSLAMAFLMPVILLFIFGYAITMDVNNLRTVVYDLDRSS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHCCHHH
LSRELVSQFRESGYFTIVATLEQGGDIDAALDANRGQVALWIPEDFSENLRRGKSAPLQV
HHHHHHHHHHHCCCEEEEEEECCCCCCCEEECCCCCEEEEECCCHHHHHHHCCCCCCEEE
VVDGSDSNTATIALGYVEAVAERFSQRTSGGLATPTIDPRVRVWYNPELKSRNYIIPGLI
EEECCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHH
AVIMAVIAALLTSLTIAREWERGTMEQLIATPVKPTELIAGKLIPYFFIGFIDVALSVAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ATLIFDVPLRGSLLLLALLSSLFLFGGLSLGILISVVARSQLVASQIAMVVSFLPAFLLS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFMYAIANMPTPLRNVTRVIPARYFVSILKGIFLKGSTLRLLAAETALLALFGVVVFILS
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
VRKFRKRIV
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]