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The map label for this gene is atpD1 [H]

Identifier: 78224596

GI number: 78224596

Start: 3820820

End: 3822232

Strand: Reverse

Name: atpD1 [H]

Synonym: Gmet_3406

Alternate gene names: 78224596

Gene position: 3822232-3820820 (Counterclockwise)

Preceding gene: 78224597

Following gene: 78224595

Centisome position: 95.62

GC content: 61.15

Gene sequence:

>1413_bases
ATGAGTCAGAACTTTGGTAGAATTTCGCAGGTTATCGGCGCGGTTATCGACGTCGAGTTCGAGCCGGGCAAACTGCCTCC
CATCTACAACGCCCTCCGGGTCACCAACCCGGCCATTGACGATAAAGAATACAACCTGGTGCTCGAAGTTGCCCAGCACC
TGGGCGAGAACTCCGTCCGGACCATCGCCATGGACTCCACCGACGGTCTCGTTCGGGGCCAGGCTGCCCTCGACACCGGC
AAGCAGATCTCCGTGCCGGTCGGCCGCAAGACCCTGGGCCGCATCCTGAACGTCATCGGCGAGCCCGTTGACGAGATGGG
TCCGGTCAATGCAGAGAAGGAGTACGGCATCCACCGCGAATCCCCTTCCTTCGTGGACCAGTCCACCAAGGTTGAAGCCT
TCACCACCGGCATCAAGGTCGTCGACCTCCTCGCTCCCTATGCCCGGGGGGGCAAGATCGGCCTCTTCGGCGGCGCCGGC
GTCGGCAAGACTGTTCTCATCATGGAGCTCATCAACAACATCGCCAAGCAGCACGGCGGTTTCTCCGTGTTCGCCGGCGT
TGGCGAGCGGACCCGTGAAGGAAACGACCTCTGGATGGAGATGAAGGAGTCCGGCGTTCTCGATAAGGCTGCTCTTGTCT
ACGGCCAGATGAACGAGCCGCCGGGAGCCCGTGCCCGGGTGGCACTCTCCGCGCTTTCCATTGCGGAGTACTTCCGTGAC
GAAGAAGGGCAGAACGTGCTCCTCTTCATCGATAACATCTTCCGTTTCACCCAGGCGGGTTCCGAGGTTTCGGCGCTTCT
CGGCCGGATCCCTTCTGCCGTTGGTTACCAGCCTACTCTGGCCACTGAGATGGGTGAGCTCCAGGAGCGGATCACCTCCA
CCACCAAAGGTTCCATCACTTCGGTTCAGGCGATCTACGTTCCGGCTGACGACCTTACCGACCCTGCACCGGCAACGGCC
TTCGCCCACCTGGATGCAACCACGGTTCTGTCCCGTCAGATCGCCGAGCTTGGCATCTACCCGGCCGTTGACCCCCTCGA
CTCCACGTCGCGGATTCTCGACCCCCAGGTAATCGGCGAAGAGCACTACGCCATCGCCCGCCAGGTTCAGTACGTCCTCC
AGAAGTACAAGGACCTCCAGGACATCATCGCCATTCTCGGCATGGACGAGCTCTCCGAGGAGGACAAGCTGGTGGTTGCC
CGCGCCCGGAAGATCCAGCGCTTCCTCTCCCAGCCCTTCCACGTGGCAGAAGCCTTCACCGGCAGCCCCGGCAAGTACGT
TGAGCTGAAGGACACCATCAAGGGCTTCCAGGAGATCGTTGCCGGCAAGCACGACGACATCCCCGAGCAGGCCTTCTACA
TGGTTGGCACCATCGAAGAGGCACTAGAAAAAGCGAAGAAGCTTGCTGCCTAA

Upstream 100 bases:

>100_bases
CTCATGGAGATCATCTCCGGTGCCGAGTCGATCAAGGGATAAGTTAATCTCACGATTATAAAATAGAGGCCCGGCACGGG
CCGCAGGAGGAAGAGGCACC

Downstream 100 bases:

>100_bases
GATTCACATGACCTCGTCGCAGGGAGGCCGTGACGGCTTCCCTGCCAAAAGGATGAAGATAGATGGCTGAAAAACTGAAA
GTCGATCTGGTAACACCCTA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta 1; F-ATPase subunit beta 1 [H]

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MSQNFGRISQVIGAVIDVEFEPGKLPPIYNALRVTNPAIDDKEYNLVLEVAQHLGENSVRTIAMDSTDGLVRGQAALDTG
KQISVPVGRKTLGRILNVIGEPVDEMGPVNAEKEYGIHRESPSFVDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAG
VGKTVLIMELINNIAKQHGGFSVFAGVGERTREGNDLWMEMKESGVLDKAALVYGQMNEPPGARARVALSALSIAEYFRD
EEGQNVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGELQERITSTTKGSITSVQAIYVPADDLTDPAPATA
FAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPQVIGEEHYAIARQVQYVLQKYKDLQDIIAILGMDELSEEDKLVVA
RARKIQRFLSQPFHVAEAFTGSPGKYVELKDTIKGFQEIVAGKHDDIPEQAFYMVGTIEEALEKAKKLAA

Sequences:

>Translated_470_residues
MSQNFGRISQVIGAVIDVEFEPGKLPPIYNALRVTNPAIDDKEYNLVLEVAQHLGENSVRTIAMDSTDGLVRGQAALDTG
KQISVPVGRKTLGRILNVIGEPVDEMGPVNAEKEYGIHRESPSFVDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAG
VGKTVLIMELINNIAKQHGGFSVFAGVGERTREGNDLWMEMKESGVLDKAALVYGQMNEPPGARARVALSALSIAEYFRD
EEGQNVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGELQERITSTTKGSITSVQAIYVPADDLTDPAPATA
FAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPQVIGEEHYAIARQVQYVLQKYKDLQDIIAILGMDELSEEDKLVVA
RARKIQRFLSQPFHVAEAFTGSPGKYVELKDTIKGFQEIVAGKHDDIPEQAFYMVGTIEEALEKAKKLAA
>Mature_469_residues
SQNFGRISQVIGAVIDVEFEPGKLPPIYNALRVTNPAIDDKEYNLVLEVAQHLGENSVRTIAMDSTDGLVRGQAALDTGK
QISVPVGRKTLGRILNVIGEPVDEMGPVNAEKEYGIHRESPSFVDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGV
GKTVLIMELINNIAKQHGGFSVFAGVGERTREGNDLWMEMKESGVLDKAALVYGQMNEPPGARARVALSALSIAEYFRDE
EGQNVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGELQERITSTTKGSITSVQAIYVPADDLTDPAPATAF
AHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPQVIGEEHYAIARQVQYVLQKYKDLQDIIAILGMDELSEEDKLVVAR
ARKIQRFLSQPFHVAEAFTGSPGKYVELKDTIKGFQEIVAGKHDDIPEQAFYMVGTIEEALEKAKKLAA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=470, Percent_Identity=75.531914893617, Blast_Score=712, Evalue=0.0,
Organism=Homo sapiens, GI19913428, Length=368, Percent_Identity=26.6304347826087, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI19913426, Length=398, Percent_Identity=26.3819095477387, Blast_Score=112, Evalue=9e-25,
Organism=Homo sapiens, GI19913424, Length=300, Percent_Identity=28, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI50345984, Length=298, Percent_Identity=24.8322147651007, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI4757810, Length=298, Percent_Identity=24.8322147651007, Blast_Score=95, Evalue=1e-19,
Organism=Escherichia coli, GI1790170, Length=463, Percent_Identity=69.9784017278618, Blast_Score=649, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=313, Percent_Identity=33.2268370607029, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1790172, Length=318, Percent_Identity=26.1006289308176, Blast_Score=112, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI25144756, Length=470, Percent_Identity=71.9148936170213, Blast_Score=682, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17510931, Length=353, Percent_Identity=27.1954674220963, Blast_Score=124, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17570191, Length=405, Percent_Identity=25.1851851851852, Blast_Score=119, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17565854, Length=298, Percent_Identity=27.5167785234899, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71988080, Length=314, Percent_Identity=23.8853503184713, Blast_Score=99, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI71988063, Length=314, Percent_Identity=23.8853503184713, Blast_Score=98, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI71988074, Length=266, Percent_Identity=23.6842105263158, Blast_Score=82, Evalue=6e-16,
Organism=Saccharomyces cerevisiae, GI6322581, Length=462, Percent_Identity=74.025974025974, Blast_Score=696, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=356, Percent_Identity=27.8089887640449, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6319370, Length=365, Percent_Identity=25.2054794520548, Blast_Score=105, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6320016, Length=263, Percent_Identity=24.7148288973384, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24638766, Length=470, Percent_Identity=75.3191489361702, Blast_Score=708, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=471, Percent_Identity=69.8513800424628, Blast_Score=648, Evalue=0.0,
Organism=Drosophila melanogaster, GI281361666, Length=357, Percent_Identity=26.890756302521, Blast_Score=118, Evalue=9e-27,
Organism=Drosophila melanogaster, GI24646341, Length=357, Percent_Identity=26.890756302521, Blast_Score=118, Evalue=9e-27,
Organism=Drosophila melanogaster, GI17136796, Length=357, Percent_Identity=26.890756302521, Blast_Score=118, Evalue=9e-27,
Organism=Drosophila melanogaster, GI24638768, Length=96, Percent_Identity=64.5833333333333, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI20129479, Length=298, Percent_Identity=27.5167785234899, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24583988, Length=298, Percent_Identity=27.1812080536913, Blast_Score=105, Evalue=8e-23,
Organism=Drosophila melanogaster, GI24583986, Length=298, Percent_Identity=27.1812080536913, Blast_Score=105, Evalue=8e-23,
Organism=Drosophila melanogaster, GI24583984, Length=298, Percent_Identity=27.1812080536913, Blast_Score=105, Evalue=8e-23,
Organism=Drosophila melanogaster, GI24583992, Length=298, Percent_Identity=27.1812080536913, Blast_Score=105, Evalue=9e-23,
Organism=Drosophila melanogaster, GI24658560, Length=298, Percent_Identity=24.8322147651007, Blast_Score=98, Evalue=1e-20,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 51034; Mature: 50903

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQNFGRISQVIGAVIDVEFEPGKLPPIYNALRVTNPAIDDKEYNLVLEVAQHLGENSVR
CCCCHHHHHHHHHHHHEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEE
TIAMDSTDGLVRGQAALDTGKQISVPVGRKTLGRILNVIGEPVDEMGPVNAEKEYGIHRE
EEEECCCCCCEECHHHHCCCCEEECCCCHHHHHHHHHHHCCCHHHHCCCCCHHHCCCCCC
SPSFVDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIAKQHGG
CCCHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC
FSVFAGVGERTREGNDLWMEMKESGVLDKAALVYGQMNEPPGARARVALSALSIAEYFRD
EEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC
EEGQNVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGELQERITSTTKGSIT
CCCCEEEEEHHHHHHHHHCCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCE
SVQAIYVPADDLTDPAPATAFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPQVIGE
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCHHHHCC
EHYAIARQVQYVLQKYKDLQDIIAILGMDELSEEDKLVVARARKIQRFLSQPFHVAEAFT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHC
GSPGKYVELKDTIKGFQEIVAGKHDDIPEQAFYMVGTIEEALEKAKKLAA
CCCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SQNFGRISQVIGAVIDVEFEPGKLPPIYNALRVTNPAIDDKEYNLVLEVAQHLGENSVR
CCCHHHHHHHHHHHHEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEE
TIAMDSTDGLVRGQAALDTGKQISVPVGRKTLGRILNVIGEPVDEMGPVNAEKEYGIHRE
EEEECCCCCCEECHHHHCCCCEEECCCCHHHHHHHHHHHCCCHHHHCCCCCHHHCCCCCC
SPSFVDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIAKQHGG
CCCHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC
FSVFAGVGERTREGNDLWMEMKESGVLDKAALVYGQMNEPPGARARVALSALSIAEYFRD
EEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC
EEGQNVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGELQERITSTTKGSIT
CCCCEEEEEHHHHHHHHHCCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCE
SVQAIYVPADDLTDPAPATAFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPQVIGE
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCHHHHCC
EHYAIARQVQYVLQKYKDLQDIIAILGMDELSEEDKLVVARARKIQRFLSQPFHVAEAFT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHC
GSPGKYVELKDTIKGFQEIVAGKHDDIPEQAFYMVGTIEEALEKAKKLAA
CCCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA