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The map label for this gene is yccM [H]

Identifier: 78224526

GI number: 78224526

Start: 3749011

End: 3750075

Strand: Reverse

Name: yccM [H]

Synonym: Gmet_3335

Alternate gene names: 78224526

Gene position: 3750075-3749011 (Counterclockwise)

Preceding gene: 78224527

Following gene: 78224525

Centisome position: 93.81

GC content: 63.85

Gene sequence:

>1065_bases
ATGGGTTCCATGGTATCCTCCTTTGGTTCGATGGTGACAGGATACCGCAGTCATGCGACACAATATGTCTCAAGGAGCAA
CGGCGTGAGCAAGCGCTACGTGCAGCCCCTCAGGATTGCCATCCAGTGGGGATTTCTCCTCTTCATGGTCTATCTGGGCG
TCAGGCTTTTCCTCTTCGTGAGCCACTTTCGCACCGGCGGGGCTGCCCCCTTCGTTCCCCGGGCCGACGGGGTCGAGGGG
TTCCTCCCCATCGCCGGGCTCCTGGGGGTGAAGGACTGGGTCGAGAGCGGCGTCATCAATCCGATCCATCCGGCGTCGGT
GGTGATCTTCGTCACCGTGGTGGCAGTGTCGCTGCTGCTCAAGCGCTCCTTCTGCTCCTGGATCTGCCCGGTGGGGACCC
TGTCGGAGCTTTTCTGGAAGCGGGGATTCGTGCTCTTTAAACGCAATATCCGCCCCCCCCGGTGGCTGGACGTGGCGCTA
CGGGGGATCAAGTACCTGCTCCTCCTCTTCTTCCTCTACTCCATCCTTTGGGCCATGACGCCGGAGGCGGCCACGGCCTT
CATCCATTCCGACTACAACGCGGTGGCCGACGTGCGGCTCCTGGACTTCTTCCTGCACCTGTCGGGCATCCCCCTCGCGG
TGATCGCGGTGCTTCTGGTCCTGTCGCTCCCGGTGCGGAATCCCTTCTGCCGCTACCTCTGCCCCTACGGGGCGCTGTTG
GGGCTTGTGTCGGTCCTCTCGCCGGTGAAGGTGACCCGGGAGAAAAAGACCTGCGTCTCCTGCGGGGTCTGCACCCAGGT
CTGCCCCTCCTACATCCCGGTGATGAGCAAGGAGCGGGTCATGTCCGAGGAGTGCGTCGGCTGCTGGCGCTGCGTGAGCC
ACTGCCGGGCCATGGGGGCCCTGGAGATGAAGCTGGCCGGCCGGAAGGTGGCGGTGAACGCCATCCTCTTTGCCGCCCTC
GTGGTGCTCATTGTTGCGGGCGGATCGCTGGTGGGGCGCGCCACGGAGAACTGGAAATCCCGGATTCCCTATGCCGAGTA
CATGCGGCTTCTGGGGCTGCGGTAA

Upstream 100 bases:

>100_bases
CGTCTCCCGCTTGGCGCTGCGGGCCGGTGCCCGGTCCCGGATCATGTCCATGATGCAGATATAGGCGCCCCAGGCCACGA
GGCCGACGCCGAAGACAACG

Downstream 100 bases:

>100_bases
CTAAGCGAGATTGCGAAATAGCGAGGGAGCGAGCTAGTCAAGAACTGAGATTTTACTACTTCACTACTTGCTATCTCGCT
ACTTCGCTCATTGACAAGAA

Product: Iron-sulfur cluster-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 353

Protein sequence:

>354_residues
MGSMVSSFGSMVTGYRSHATQYVSRSNGVSKRYVQPLRIAIQWGFLLFMVYLGVRLFLFVSHFRTGGAAPFVPRADGVEG
FLPIAGLLGVKDWVESGVINPIHPASVVIFVTVVAVSLLLKRSFCSWICPVGTLSELFWKRGFVLFKRNIRPPRWLDVAL
RGIKYLLLLFFLYSILWAMTPEAATAFIHSDYNAVADVRLLDFFLHLSGIPLAVIAVLLVLSLPVRNPFCRYLCPYGALL
GLVSVLSPVKVTREKKTCVSCGVCTQVCPSYIPVMSKERVMSEECVGCWRCVSHCRAMGALEMKLAGRKVAVNAILFAAL
VVLIVAGGSLVGRATENWKSRIPYAEYMRLLGLR

Sequences:

>Translated_354_residues
MGSMVSSFGSMVTGYRSHATQYVSRSNGVSKRYVQPLRIAIQWGFLLFMVYLGVRLFLFVSHFRTGGAAPFVPRADGVEG
FLPIAGLLGVKDWVESGVINPIHPASVVIFVTVVAVSLLLKRSFCSWICPVGTLSELFWKRGFVLFKRNIRPPRWLDVAL
RGIKYLLLLFFLYSILWAMTPEAATAFIHSDYNAVADVRLLDFFLHLSGIPLAVIAVLLVLSLPVRNPFCRYLCPYGALL
GLVSVLSPVKVTREKKTCVSCGVCTQVCPSYIPVMSKERVMSEECVGCWRCVSHCRAMGALEMKLAGRKVAVNAILFAAL
VVLIVAGGSLVGRATENWKSRIPYAEYMRLLGLR
>Mature_353_residues
GSMVSSFGSMVTGYRSHATQYVSRSNGVSKRYVQPLRIAIQWGFLLFMVYLGVRLFLFVSHFRTGGAAPFVPRADGVEGF
LPIAGLLGVKDWVESGVINPIHPASVVIFVTVVAVSLLLKRSFCSWICPVGTLSELFWKRGFVLFKRNIRPPRWLDVALR
GIKYLLLLFFLYSILWAMTPEAATAFIHSDYNAVADVRLLDFFLHLSGIPLAVIAVLLVLSLPVRNPFCRYLCPYGALLG
LVSVLSPVKVTREKKTCVSCGVCTQVCPSYIPVMSKERVMSEECVGCWRCVSHCRAMGALEMKLAGRKVAVNAILFAALV
VLIVAGGSLVGRATENWKSRIPYAEYMRLLGLR

Specific function: Unknown

COG id: COG0348

COG function: function code C; Polyferredoxin

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787226, Length=327, Percent_Identity=42.5076452599388, Blast_Score=248, Evalue=6e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39194; Mature: 39063

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSMVSSFGSMVTGYRSHATQYVSRSNGVSKRYVQPLRIAIQWGFLLFMVYLGVRLFLFV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SHFRTGGAAPFVPRADGVEGFLPIAGLLGVKDWVESGVINPIHPASVVIFVTVVAVSLLL
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
KRSFCSWICPVGTLSELFWKRGFVLFKRNIRPPRWLDVALRGIKYLLLLFFLYSILWAMT
HHHHHHHHCCHHHHHHHHHHCCHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
PEAATAFIHSDYNAVADVRLLDFFLHLSGIPLAVIAVLLVLSLPVRNPFCRYLCPYGALL
HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
GLVSVLSPVKVTREKKTCVSCGVCTQVCPSYIPVMSKERVMSEECVGCWRCVSHCRAMGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCC
LEMKLAGRKVAVNAILFAALVVLIVAGGSLVGRATENWKSRIPYAEYMRLLGLR
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure 
GSMVSSFGSMVTGYRSHATQYVSRSNGVSKRYVQPLRIAIQWGFLLFMVYLGVRLFLFV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]