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The map label for this gene is 78224473

Identifier: 78224473

GI number: 78224473

Start: 3691420

End: 3692445

Strand: Reverse

Name: 78224473

Synonym: Gmet_3282

Alternate gene names: NA

Gene position: 3692445-3691420 (Counterclockwise)

Preceding gene: 78224474

Following gene: 78224472

Centisome position: 92.37

GC content: 58.09

Gene sequence:

>1026_bases
ATGATCGGAAAGGAAGAGTGTATGGAAGTCAGAATTCTCAAGAAACAGGGCAAAAGCATCCGGGAGATCTCGCGGATCAC
CGGGCTATGCCGAAACACGGTCAGGAAGTTCCTCAGATCAACGGCCGATCCCAGATACAAAGAACGGGCGAAGCGGCCGG
GGAAGCTAGATCCATTTAAAGCCTTTCTCGAAGAGCGGGTGAAGGCGGCGCTGCCACACCGGATTCCTGCTCCGGTGCTT
GCTCGGGAAATTGCCAGCTTTGGCTACGATGGCTGCGAGCGCACCGTAAGAACGTTTTTGGCGACACTTTACTCCCGTGT
CACTCCGGAGCCGGTTGTCCGGTTTGAAACGGAGCCCGGCAAGCAGATGCAAGCCGACTGGTGCGAATTGCGCAGGGGTA
AACACCCATTGTACGCGTTCGTTGGAACCCTTGGTTTCAGCCGCGATTCGTTCGTCGTCTTCACCACCAGCCAGGCCTTT
GATGTCCTTCGTGAGTGCCATGAGATGGCATTTTCCTTCTTCGGCGGCGTCCCGCGTGAAGTGCTCTATGACAACATGAA
GACTGTGGTTCTGGAGCGAAACGCCTTCGGCGAGGGCAAGCACCGCTTCCACTCCGGCCTGTGGGACACAGCCAAGCATT
TCGGGTTTATCCCCCGGCTGTGCAAGCCGTACCGCGCCAAGACCAAGGGAAAGGTCGAGCGGTTCAACCGCTACCTGCGG
TACAGCTTCTACTATCCGCTGGTCTCGCGCCTTAAGCAGGCAGGATTAACTCTCGATGTCGCGACCGCCAACATCGAGGT
CCGTAACTGGCTTAATGACGTAGCCAACTGCCGAATCCATGGCGAGACCAGCGAGCGCCCCTGCGATCGTCTCAAGATCG
AGCGCGCGGCAATGTCGCCGCTGCCGCCAAGGGTTAAGGTTGAGCAGGGCAAGCCGGAAGTCATCACTCCCATGCCGTGG
CCGGTGATCCCACTTCAGCGCCCCGCCTCCTTCTATGATCAGATCCTTCAGGAGGGGCGGCTATGA

Upstream 100 bases:

>100_bases
GAAAGTCGACTGGTGTTAGCGGCAATGTAAAAATGACCCACCTCGGAAATTGAAAATTGACCCACTCTTCCTGATAACCT
AGCCGACCTGGAGGGTCGGC

Downstream 100 bases:

>100_bases
GCGACATCCAGCACCAGCGTATGGTCACCCTCTGCGACGACTTGAAGTTTCTGGCGGTGACCGATGTGTACGCCGACCTT
GCCGATGCTGCGGCAAAGCA

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MIGKEECMEVRILKKQGKSIREISRITGLCRNTVRKFLRSTADPRYKERAKRPGKLDPFKAFLEERVKAALPHRIPAPVL
AREIASFGYDGCERTVRTFLATLYSRVTPEPVVRFETEPGKQMQADWCELRRGKHPLYAFVGTLGFSRDSFVVFTTSQAF
DVLRECHEMAFSFFGGVPREVLYDNMKTVVLERNAFGEGKHRFHSGLWDTAKHFGFIPRLCKPYRAKTKGKVERFNRYLR
YSFYYPLVSRLKQAGLTLDVATANIEVRNWLNDVANCRIHGETSERPCDRLKIERAAMSPLPPRVKVEQGKPEVITPMPW
PVIPLQRPASFYDQILQEGRL

Sequences:

>Translated_341_residues
MIGKEECMEVRILKKQGKSIREISRITGLCRNTVRKFLRSTADPRYKERAKRPGKLDPFKAFLEERVKAALPHRIPAPVL
AREIASFGYDGCERTVRTFLATLYSRVTPEPVVRFETEPGKQMQADWCELRRGKHPLYAFVGTLGFSRDSFVVFTTSQAF
DVLRECHEMAFSFFGGVPREVLYDNMKTVVLERNAFGEGKHRFHSGLWDTAKHFGFIPRLCKPYRAKTKGKVERFNRYLR
YSFYYPLVSRLKQAGLTLDVATANIEVRNWLNDVANCRIHGETSERPCDRLKIERAAMSPLPPRVKVEQGKPEVITPMPW
PVIPLQRPASFYDQILQEGRL
>Mature_341_residues
MIGKEECMEVRILKKQGKSIREISRITGLCRNTVRKFLRSTADPRYKERAKRPGKLDPFKAFLEERVKAALPHRIPAPVL
AREIASFGYDGCERTVRTFLATLYSRVTPEPVVRFETEPGKQMQADWCELRRGKHPLYAFVGTLGFSRDSFVVFTTSQAF
DVLRECHEMAFSFFGGVPREVLYDNMKTVVLERNAFGEGKHRFHSGLWDTAKHFGFIPRLCKPYRAKTKGKVERFNRYLR
YSFYYPLVSRLKQAGLTLDVATANIEVRNWLNDVANCRIHGETSERPCDRLKIERAAMSPLPPRVKVEQGKPEVITPMPW
PVIPLQRPASFYDQILQEGRL

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG4584

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR017894
- InterPro:   IPR001584
- InterPro:   IPR006120
- InterPro:   IPR012337 [H]

Pfam domain/function: PF02796 HTH_7; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 39404; Mature: 39404

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGKEECMEVRILKKQGKSIREISRITGLCRNTVRKFLRSTADPRYKERAKRPGKLDPFK
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHH
AFLEERVKAALPHRIPAPVLAREIASFGYDGCERTVRTFLATLYSRVTPEPVVRFETEPG
HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
KQMQADWCELRRGKHPLYAFVGTLGFSRDSFVVFTTSQAFDVLRECHEMAFSFFGGVPRE
CHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCHH
VLYDNMKTVVLERNAFGEGKHRFHSGLWDTAKHFGFIPRLCKPYRAKTKGKVERFNRYLR
HHHCCHHHEEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHCCCHHHHHHHHHHH
YSFYYPLVSRLKQAGLTLDVATANIEVRNWLNDVANCRIHGETSERPCDRLKIERAAMSP
HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHCCC
LPPRVKVEQGKPEVITPMPWPVIPLQRPASFYDQILQEGRL
CCCCEEECCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MIGKEECMEVRILKKQGKSIREISRITGLCRNTVRKFLRSTADPRYKERAKRPGKLDPFK
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHH
AFLEERVKAALPHRIPAPVLAREIASFGYDGCERTVRTFLATLYSRVTPEPVVRFETEPG
HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
KQMQADWCELRRGKHPLYAFVGTLGFSRDSFVVFTTSQAFDVLRECHEMAFSFFGGVPRE
CHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCHH
VLYDNMKTVVLERNAFGEGKHRFHSGLWDTAKHFGFIPRLCKPYRAKTKGKVERFNRYLR
HHHCCHHHEEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHCCCHHHHHHHHHHH
YSFYYPLVSRLKQAGLTLDVATANIEVRNWLNDVANCRIHGETSERPCDRLKIERAAMSP
HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHCCC
LPPRVKVEQGKPEVITPMPWPVIPLQRPASFYDQILQEGRL
CCCCEEECCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8382825 [H]