Click here to switch to the map view.

The map label for this gene is 78224355

Identifier: 78224355

GI number: 78224355

Start: 3562229

End: 3563176

Strand: Reverse

Name: 78224355

Synonym: Gmet_3164

Alternate gene names: NA

Gene position: 3563176-3562229 (Counterclockwise)

Preceding gene: 78224359

Following gene: 78224354

Centisome position: 89.14

GC content: 63.61

Gene sequence:

>948_bases
ATGGAAACCCAGGACGAAAAGAGTGAACGCGAACGGAGTGTGCCCCCGATCGTCGCCATCGACGGTACGGCCATTAAAAG
GATACGCGAAGCCAAGAAACTGACCCAGCTCTACGTGGCGAGCGTGGTGGGAGTCACCACCGACACTATTTCCCGGTGGG
AGAACAACCGCTACCCCACCATCAAGCGTGACAACGCCGAGAAGGTGGCAACGGCCCTGGAGGTTTCCCTTGAGGAAATT
CTCAAGCCGGAGCCGGTTTCCGAGCCGGAACCGGAGCCGGAAGCCGTTCCCGTGCTCCTGTCGCCGCGGAAACAGCGTCT
AGCGCCCCTTGTCCTCGCCGTGGGCCTTGGCACCCTCCTGGTCGCCTTGATTGTGGGGGCCGTCCTCTCGCGCCGTGGCG
CCGCCGAGCTGGTGGCGACCAGGGTTCTCCCCCCCTTTGGAGCACCGGGACAGCTCGTTCCGGTTCAGGTGAAGGTGGAC
CGGCGCGACGGAGAGAAGAGCGGATTCATCGTCAAGGAGCGGATTCCTGCCGGCTGGCGGTTTGTTGCCTCCAATCCCCC
GGTGGCAGGAGAGGCGGGGGAACGGGAGGTGAAATGGCTCATCCCCCCCGGCGGTACCGGTCCTGTCACCATTTCGTATA
CCCTCACGGCGCCCCGGACGCTTCTCCTGGGGAGCCAGGCCGACTTTGGCGGAGAGGTCATCCTGAGCCACGGGAAGGCA
ACCCGCCGGGGGATCATCGGCGGTCCGGCGCGGATTGTCGTCAATGGCCGCCACTGGGCCGACACCAATGGCGACGGCAG
GATTGACGACAACGAGATCATGCCCGCCTACTACCTGTGCGAAGAGATGAGGGGTCTCGGCCTCGACTGGAAGACCATCG
AGACCATCTGGAGCGGCGCGGGGTATACGTGGAACGATAAGCTGAAGGTTTTCGAGGTGGTCAAGTGA

Upstream 100 bases:

>100_bases
GGAATCCAGTACTGCAAGTTTCTTGCCCGTGGCTGAGCACCTGGCGTCTGAACGCAAAATGCTTCCGTGACTTTCGGAAA
ACCTGCTACAATGCCACCCC

Downstream 100 bases:

>100_bases
CCGAGCGGCGCTATACCGCCTTCTCCGACGAGCTGCGCCACATATTCGGTTGCCGGGTCCAGCGGATCTCGGTGGATGCC
GGTTTCACCTGTCCCAACCG

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator XRE Family

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
METQDEKSERERSVPPIVAIDGTAIKRIREAKKLTQLYVASVVGVTTDTISRWENNRYPTIKRDNAEKVATALEVSLEEI
LKPEPVSEPEPEPEAVPVLLSPRKQRLAPLVLAVGLGTLLVALIVGAVLSRRGAAELVATRVLPPFGAPGQLVPVQVKVD
RRDGEKSGFIVKERIPAGWRFVASNPPVAGEAGEREVKWLIPPGGTGPVTISYTLTAPRTLLLGSQADFGGEVILSHGKA
TRRGIIGGPARIVVNGRHWADTNGDGRIDDNEIMPAYYLCEEMRGLGLDWKTIETIWSGAGYTWNDKLKVFEVVK

Sequences:

>Translated_315_residues
METQDEKSERERSVPPIVAIDGTAIKRIREAKKLTQLYVASVVGVTTDTISRWENNRYPTIKRDNAEKVATALEVSLEEI
LKPEPVSEPEPEPEAVPVLLSPRKQRLAPLVLAVGLGTLLVALIVGAVLSRRGAAELVATRVLPPFGAPGQLVPVQVKVD
RRDGEKSGFIVKERIPAGWRFVASNPPVAGEAGEREVKWLIPPGGTGPVTISYTLTAPRTLLLGSQADFGGEVILSHGKA
TRRGIIGGPARIVVNGRHWADTNGDGRIDDNEIMPAYYLCEEMRGLGLDWKTIETIWSGAGYTWNDKLKVFEVVK
>Mature_315_residues
METQDEKSERERSVPPIVAIDGTAIKRIREAKKLTQLYVASVVGVTTDTISRWENNRYPTIKRDNAEKVATALEVSLEEI
LKPEPVSEPEPEPEAVPVLLSPRKQRLAPLVLAVGLGTLLVALIVGAVLSRRGAAELVATRVLPPFGAPGQLVPVQVKVD
RRDGEKSGFIVKERIPAGWRFVASNPPVAGEAGEREVKWLIPPGGTGPVTISYTLTAPRTLLLGSQADFGGEVILSHGKA
TRRGIIGGPARIVVNGRHWADTNGDGRIDDNEIMPAYYLCEEMRGLGLDWKTIETIWSGAGYTWNDKLKVFEVVK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34305; Mature: 34305

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS00018 EF_HAND_1 ; PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METQDEKSERERSVPPIVAIDGTAIKRIREAKKLTQLYVASVVGVTTDTISRWENNRYPT
CCCCCCHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
IKRDNAEKVATALEVSLEEILKPEPVSEPEPEPEAVPVLLSPRKQRLAPLVLAVGLGTLL
EECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH
VALIVGAVLSRRGAAELVATRVLPPFGAPGQLVPVQVKVDRRDGEKSGFIVKERIPAGWR
HHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEECCCCCEE
FVASNPPVAGEAGEREVKWLIPPGGTGPVTISYTLTAPRTLLLGSQADFGGEVILSHGKA
EEECCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCEEEEEECCCCCCCEEEEECCCH
TRRGIIGGPARIVVNGRHWADTNGDGRIDDNEIMPAYYLCEEMRGLGLDWKTIETIWSGA
HHCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCC
GYTWNDKLKVFEVVK
CCEECCCEEEEEECC
>Mature Secondary Structure
METQDEKSERERSVPPIVAIDGTAIKRIREAKKLTQLYVASVVGVTTDTISRWENNRYPT
CCCCCCHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
IKRDNAEKVATALEVSLEEILKPEPVSEPEPEPEAVPVLLSPRKQRLAPLVLAVGLGTLL
EECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH
VALIVGAVLSRRGAAELVATRVLPPFGAPGQLVPVQVKVDRRDGEKSGFIVKERIPAGWR
HHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEECCCCCEE
FVASNPPVAGEAGEREVKWLIPPGGTGPVTISYTLTAPRTLLLGSQADFGGEVILSHGKA
EEECCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCEEEEEECCCCCCCEEEEECCCH
TRRGIIGGPARIVVNGRHWADTNGDGRIDDNEIMPAYYLCEEMRGLGLDWKTIETIWSGA
HHCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCC
GYTWNDKLKVFEVVK
CCEECCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA