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The map label for this gene is ytqA [H]

Identifier: 78224354

GI number: 78224354

Start: 3561300

End: 3562232

Strand: Reverse

Name: ytqA [H]

Synonym: Gmet_3163

Alternate gene names: 78224354

Gene position: 3562232-3561300 (Counterclockwise)

Preceding gene: 78224355

Following gene: 78224347

Centisome position: 89.11

GC content: 65.7

Gene sequence:

>933_bases
GTGACCGAGCGGCGCTATACCGCCTTCTCCGACGAGCTGCGCCACATATTCGGTTGCCGGGTCCAGCGGATCTCGGTGGA
TGCCGGTTTCACCTGTCCCAACCGGGACGGCGCAGTCGGTACCGGTGGGTGCATTTTCTGCGGCGGCAAGGGGTCCGGCT
CCTTCGGCATCAGGCCCGAGCTCTCCGTCACCCGCCAGCTCCTCCATGGGAAGGAATTCCTCGCCCGCCGTTACGGCGCC
GCGAAGTTTCTCGCCTACTTCCAGGCCTACTCCAACACCTACGCCCCCGTGGAGCGGCTCCGCCTCCTCTACGAAGAGGC
CTTGGCAGTGTCCGACGTGGCTGGCCTCATCGTCGGCACCCGCCCCGACTGCCTCCCCTCCGAGGTTCTCGATCTCCTGG
CCGGGTATGCCCGCCGCACCTACTTCTGGCTGGAGTTGGGTCTTCAATCCCCCCTGGATCGGACCTTGGCGCTCATCAAC
CGGGGCCATGACTTCGCCGCCTTTGCCGATGCCGTGGTCTGGAGCCGGGAGCGGGGAATCCGGGTCTGCGCCCATGTGAT
CCTGGGGCTGCCGGGGGAGTCGCGGGAGGAGATGCTGGCAACTGCTGAAATACTGAACGGACTCGGCGTGGAGGGGGTGA
AGCTTCACCAGCTCCACGTGATGAAGGGGACAGTGCTTGAGGAGATGTACCGGCGGGGAGAGGTGCGGTGCCTGGAGCGG
GACGCCTACGTGGATATCGTCTGCGATTTCCTGGAACGGCTCGATCCCCGCATCGTCATCCATCGCCTTGTGGGGGATGC
CCCCGCTGACCACCTGGTGGCGCCGGATTGGTCCTTGCGGAAGGGGGAGGTGCTTGATGCCGTCGATGCCGAGCTGACGC
GGCGGGTGACACGGCAGGGATCGGTTATGCGGGATCGTGGGAGGATGGTCTAG

Upstream 100 bases:

>100_bases
AGATGAGGGGTCTCGGCCTCGACTGGAAGACCATCGAGACCATCTGGAGCGGCGCGGGGTATACGTGGAACGATAAGCTG
AAGGTTTTCGAGGTGGTCAA

Downstream 100 bases:

>100_bases
AACGGATACCCCAGCCCCACGAAGACCGCTGGCCCGTCGTTGCCGACGCCGATGTCGACCCGTCCCACGATGTTGGGGCG
GACCACTGCCCGGAAACCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MTERRYTAFSDELRHIFGCRVQRISVDAGFTCPNRDGAVGTGGCIFCGGKGSGSFGIRPELSVTRQLLHGKEFLARRYGA
AKFLAYFQAYSNTYAPVERLRLLYEEALAVSDVAGLIVGTRPDCLPSEVLDLLAGYARRTYFWLELGLQSPLDRTLALIN
RGHDFAAFADAVVWSRERGIRVCAHVILGLPGESREEMLATAEILNGLGVEGVKLHQLHVMKGTVLEEMYRRGEVRCLER
DAYVDIVCDFLERLDPRIVIHRLVGDAPADHLVAPDWSLRKGEVLDAVDAELTRRVTRQGSVMRDRGRMV

Sequences:

>Translated_310_residues
MTERRYTAFSDELRHIFGCRVQRISVDAGFTCPNRDGAVGTGGCIFCGGKGSGSFGIRPELSVTRQLLHGKEFLARRYGA
AKFLAYFQAYSNTYAPVERLRLLYEEALAVSDVAGLIVGTRPDCLPSEVLDLLAGYARRTYFWLELGLQSPLDRTLALIN
RGHDFAAFADAVVWSRERGIRVCAHVILGLPGESREEMLATAEILNGLGVEGVKLHQLHVMKGTVLEEMYRRGEVRCLER
DAYVDIVCDFLERLDPRIVIHRLVGDAPADHLVAPDWSLRKGEVLDAVDAELTRRVTRQGSVMRDRGRMV
>Mature_309_residues
TERRYTAFSDELRHIFGCRVQRISVDAGFTCPNRDGAVGTGGCIFCGGKGSGSFGIRPELSVTRQLLHGKEFLARRYGAA
KFLAYFQAYSNTYAPVERLRLLYEEALAVSDVAGLIVGTRPDCLPSEVLDLLAGYARRTYFWLELGLQSPLDRTLALINR
GHDFAAFADAVVWSRERGIRVCAHVILGLPGESREEMLATAEILNGLGVEGVKLHQLHVMKGTVLEEMYRRGEVRCLERD
AYVDIVCDFLERLDPRIVIHRLVGDAPADHLVAPDWSLRKGEVLDAVDAELTRRVTRQGSVMRDRGRMV

Specific function: Unknown

COG id: COG1242

COG function: function code R; Predicted Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI2367204, Length=278, Percent_Identity=40.2877697841727, Blast_Score=229, Evalue=2e-61,
Organism=Caenorhabditis elegans, GI133955098, Length=175, Percent_Identity=29.1428571428571, Blast_Score=66, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6325171, Length=171, Percent_Identity=26.9005847953216, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 34612; Mature: 34481

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTERRYTAFSDELRHIFGCRVQRISVDAGFTCPNRDGAVGTGGCIFCGGKGSGSFGIRPE
CCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
LSVTRQLLHGKEFLARRYGAAKFLAYFQAYSNTYAPVERLRLLYEEALAVSDVAGLIVGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECC
RPDCLPSEVLDLLAGYARRTYFWLELGLQSPLDRTLALINRGHDFAAFADAVVWSRERGI
CCCCCHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCH
RVCAHVILGLPGESREEMLATAEILNGLGVEGVKLHQLHVMKGTVLEEMYRRGEVRCLER
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEECH
DAYVDIVCDFLERLDPRIVIHRLVGDAPADHLVAPDWSLRKGEVLDAVDAELTRRVTRQG
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCC
SVMRDRGRMV
CHHHHCCCCC
>Mature Secondary Structure 
TERRYTAFSDELRHIFGCRVQRISVDAGFTCPNRDGAVGTGGCIFCGGKGSGSFGIRPE
CCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
LSVTRQLLHGKEFLARRYGAAKFLAYFQAYSNTYAPVERLRLLYEEALAVSDVAGLIVGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECC
RPDCLPSEVLDLLAGYARRTYFWLELGLQSPLDRTLALINRGHDFAAFADAVVWSRERGI
CCCCCHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCH
RVCAHVILGLPGESREEMLATAEILNGLGVEGVKLHQLHVMKGTVLEEMYRRGEVRCLER
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEECH
DAYVDIVCDFLERLDPRIVIHRLVGDAPADHLVAPDWSLRKGEVLDAVDAELTRRVTRQG
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCC
SVMRDRGRMV
CHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]