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The map label for this gene is ybcK [H]

Identifier: 78224334

GI number: 78224334

Start: 3540161

End: 3542029

Strand: Reverse

Name: ybcK [H]

Synonym: Gmet_3143

Alternate gene names: 78224334

Gene position: 3542029-3540161 (Counterclockwise)

Preceding gene: 78224335

Following gene: 78224333

Centisome position: 88.61

GC content: 37.24

Gene sequence:

>1869_bases
GTGGAACGACCTCTTTGTATTTCGTATATCCGGTTTTCAAAAGCAACACAAGCAGAGGGAAGCAGCTTGGAAAGACAGCT
TCAACTCTCCCGAACGTACGCAGAAGAACACGGGTTAGTGCTAGATGATAAACATTCCTATCAAGATTTGGGTAAGTCCG
CCTTCACGAGTGAACATGTCAAGGAAGGTGAATTTGGTGTATTTCTCGAATTTGTGAAGCAAGGACGGGTGCCTAAAGGA
TCGGTTCTTCTAGTCGAATCGCTGGACCGATTGAGTCGAGAGAGTGTATTGACAGCCTTCAAGCAATTTCAAGAGATTTT
GGACGCTGGCATCAAAATCGTTACTCTTAGTGACAAAATGGAGTACACAAAAGAAGGATTTGAAGCGAATATCGGCAACA
TATTCATTTCCTTGGGTATTATGGCTCGTGCAAATGAAGAAAGCTTGCGGAAATCAGAACGAATATGTGCGGCGTGGCGT
CTGAAGCGCAAAAATCTTCACAATATAAAGTTGACAGCGAATTGTCCAGGGTGGCTTGAACTAACTCCTGACAAGAAAGA
TTTTATACTGAAAGAAGACAGAGTCGAAATTGTAAAACAAATATTTGAATTATCTTTATCTGGTCTTGGTGTAAAGGCAA
TATCAACCATATTAAATAAACAAAAAATAGAACCTTTTAGGTCAAAAATAGGTTGGTATCAGACAACCGTCAGAAAAATC
CTTTCCAATAGTGCTGTGATTGGAGAGTTTCAGCCACATGTGTTTGGCTCAAAACATTCAAAACCGGTTCCGGACGGTGA
ACTAATCAAAGATTATTTTCCTCCTATTATAGACACCGATACATTCTATGCAGTACAAGCTAAATTGAAAAACGGAGCAC
ATAGACCTGGTAGAACTGCTAAAGTAGAAAATTTGTTTAGCGGATATACAAGGTGTGGTTACTGTGGTTCACGTATGGAT
GTTGTTGCTAGGCATAACGTTGGAGGTGAAGTAAGGTATCTGGTATGTGATAGTGCAAGACGCGGAGTCAAGTGTAGTTA
CATTTCTATGAAATGTAATGAGATCGAGAAAGCATTTTTTGAATATTGCAGAGAAATTGATATTAGATATGTGCTTAGAG
CAGAACAACAGGCAGACCAGAATAGATTAAATGAACTGAGAAAAAGCTTAACGGCAAGAAATGGCAAACTAATGAAGGTG
CAAAAACAAATTGATATGTTGAATGTTTTTTTAGATGATATTACTGAAAGAGCAGAATTAGAGCATTACCACGAACAGAT
AAAGAAAAAGTTAGAAGAAAAAACAAACCTATCTGAAGAGATAGAAAAATTGAGTAAGGGAATATGCATCGCAGAATATG
ATAATAATAATATAGATGTTAGAGTGCAAAATTTGCTTACTTTGGATAAGGCACAGAATAAATCAGTGAAAGAAGATGAC
AAAATAATGTTTAGAATCAGATTGCGTGACGAGTTAAGACAAATAATAAGCCAAATATTAGTATACCCGAGAGGAAGCGT
CTTTAGTGATGAACAGATAGAACAGAAAGAAAGAGACTACGAAATTAAAATAAAAAGTGCATCTGATTCAGAAAAACACA
TTCTGAAGCATGAAAAAACCATTGATTTGGATGGAATGAGGCAGTCACAGCAAAACACAAAAGATGATAGATTCTTCGTC
GTCAGGTTCAAAAACGGTAACTACCGAACTATTAAATACGACAAGAAACAACAAGCGTACCGGGTAACTTCAGAATTAAT
TAACGATAAATTGAATTGGTGGATGGGGAATAAAGAAATGGCGCCAATATTTAGAGAAGAGGAAGAATTACACCCATTCG
AAACCGAATTTGAACTGGATTCAAATTAG

Upstream 100 bases:

>100_bases
TCCCTGGGATGAACGATGCTCTAATAGTGTATAGATTTGCACTACTGAAAAATGTATAAAGATTAATCATAGTTGAATAT
TAAAGACAGGGAAGCTCTCC

Downstream 100 bases:

>100_bases
TCTCGCCAAACATAATGAATGGTATTGTAAGAGTGACATCTCTAGTTACCATTAATAAGAGTCTAGCAAAACATACGTTT
TTAGTATGCAATATATAACA

Product: resolvase-like:recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 622; Mature: 622

Protein sequence:

>622_residues
MERPLCISYIRFSKATQAEGSSLERQLQLSRTYAEEHGLVLDDKHSYQDLGKSAFTSEHVKEGEFGVFLEFVKQGRVPKG
SVLLVESLDRLSRESVLTAFKQFQEILDAGIKIVTLSDKMEYTKEGFEANIGNIFISLGIMARANEESLRKSERICAAWR
LKRKNLHNIKLTANCPGWLELTPDKKDFILKEDRVEIVKQIFELSLSGLGVKAISTILNKQKIEPFRSKIGWYQTTVRKI
LSNSAVIGEFQPHVFGSKHSKPVPDGELIKDYFPPIIDTDTFYAVQAKLKNGAHRPGRTAKVENLFSGYTRCGYCGSRMD
VVARHNVGGEVRYLVCDSARRGVKCSYISMKCNEIEKAFFEYCREIDIRYVLRAEQQADQNRLNELRKSLTARNGKLMKV
QKQIDMLNVFLDDITERAELEHYHEQIKKKLEEKTNLSEEIEKLSKGICIAEYDNNNIDVRVQNLLTLDKAQNKSVKEDD
KIMFRIRLRDELRQIISQILVYPRGSVFSDEQIEQKERDYEIKIKSASDSEKHILKHEKTIDLDGMRQSQQNTKDDRFFV
VRFKNGNYRTIKYDKKQQAYRVTSELINDKLNWWMGNKEMAPIFREEEELHPFETEFELDSN

Sequences:

>Translated_622_residues
MERPLCISYIRFSKATQAEGSSLERQLQLSRTYAEEHGLVLDDKHSYQDLGKSAFTSEHVKEGEFGVFLEFVKQGRVPKG
SVLLVESLDRLSRESVLTAFKQFQEILDAGIKIVTLSDKMEYTKEGFEANIGNIFISLGIMARANEESLRKSERICAAWR
LKRKNLHNIKLTANCPGWLELTPDKKDFILKEDRVEIVKQIFELSLSGLGVKAISTILNKQKIEPFRSKIGWYQTTVRKI
LSNSAVIGEFQPHVFGSKHSKPVPDGELIKDYFPPIIDTDTFYAVQAKLKNGAHRPGRTAKVENLFSGYTRCGYCGSRMD
VVARHNVGGEVRYLVCDSARRGVKCSYISMKCNEIEKAFFEYCREIDIRYVLRAEQQADQNRLNELRKSLTARNGKLMKV
QKQIDMLNVFLDDITERAELEHYHEQIKKKLEEKTNLSEEIEKLSKGICIAEYDNNNIDVRVQNLLTLDKAQNKSVKEDD
KIMFRIRLRDELRQIISQILVYPRGSVFSDEQIEQKERDYEIKIKSASDSEKHILKHEKTIDLDGMRQSQQNTKDDRFFV
VRFKNGNYRTIKYDKKQQAYRVTSELINDKLNWWMGNKEMAPIFREEEELHPFETEFELDSN
>Mature_622_residues
MERPLCISYIRFSKATQAEGSSLERQLQLSRTYAEEHGLVLDDKHSYQDLGKSAFTSEHVKEGEFGVFLEFVKQGRVPKG
SVLLVESLDRLSRESVLTAFKQFQEILDAGIKIVTLSDKMEYTKEGFEANIGNIFISLGIMARANEESLRKSERICAAWR
LKRKNLHNIKLTANCPGWLELTPDKKDFILKEDRVEIVKQIFELSLSGLGVKAISTILNKQKIEPFRSKIGWYQTTVRKI
LSNSAVIGEFQPHVFGSKHSKPVPDGELIKDYFPPIIDTDTFYAVQAKLKNGAHRPGRTAKVENLFSGYTRCGYCGSRMD
VVARHNVGGEVRYLVCDSARRGVKCSYISMKCNEIEKAFFEYCREIDIRYVLRAEQQADQNRLNELRKSLTARNGKLMKV
QKQIDMLNVFLDDITERAELEHYHEQIKKKLEEKTNLSEEIEKLSKGICIAEYDNNNIDVRVQNLLTLDKAQNKSVKEDD
KIMFRIRLRDELRQIISQILVYPRGSVFSDEQIEQKERDYEIKIKSASDSEKHILKHEKTIDLDGMRQSQQNTKDDRFFV
VRFKNGNYRTIKYDKKQQAYRVTSELINDKLNWWMGNKEMAPIFREEEELHPFETEFELDSN

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

Organism=Escherichia coli, GI1786756, Length=427, Percent_Identity=32.7868852459016, Blast_Score=180, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 72198; Mature: 72198

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERPLCISYIRFSKATQAEGSSLERQLQLSRTYAEEHGLVLDDKHSYQDLGKSAFTSEHV
CCCCEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCHHHHCHHHHHHHHH
KEGEFGVFLEFVKQGRVPKGSVLLVESLDRLSRESVLTAFKQFQEILDAGIKIVTLSDKM
CCCCHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHH
EYTKEGFEANIGNIFISLGIMARANEESLRKSERICAAWRLKRKNLHNIKLTANCPGWLE
HHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEE
LTPDKKDFILKEDRVEIVKQIFELSLSGLGVKAISTILNKQKIEPFRSKIGWYQTTVRKI
ECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LSNSAVIGEFQPHVFGSKHSKPVPDGELIKDYFPPIIDTDTFYAVQAKLKNGAHRPGRTA
HCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCH
KVENLFSGYTRCGYCGSRMDVVARHNVGGEVRYLVCDSARRGVKCSYISMKCNEIEKAFF
HHHHHHHHHHHHCCCCCCHHEEEECCCCCCEEEEEECCCCCCCEEEEEECHHHHHHHHHH
EYCREIDIRYVLRAEQQADQNRLNELRKSLTARNGKLMKVQKQIDMLNVFLDDITERAEL
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHH
EHYHEQIKKKLEEKTNLSEEIEKLSKGICIAEYDNNNIDVRVQNLLTLDKAQNKSVKEDD
HHHHHHHHHHHHHHCCHHHHHHHHHCCEEEEEECCCCEEEEEHHHHHHHHHCCCCCCCCC
KIMFRIRLRDELRQIISQILVYPRGSVFSDEQIEQKERDYEIKIKSASDSEKHILKHEKT
EEEEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEEEECCCCCHHHHHHCCCC
IDLDGMRQSQQNTKDDRFFVVRFKNGNYRTIKYDKKQQAYRVTSELINDKLNWWMGNKEM
CCCCCCHHHHCCCCCCEEEEEEEECCCEEEEEECCHHHHHHHHHHHHCCHHHEEECCCCC
APIFREEEELHPFETEFELDSN
CCHHCCHHHCCCCCCCEEECCC
>Mature Secondary Structure
MERPLCISYIRFSKATQAEGSSLERQLQLSRTYAEEHGLVLDDKHSYQDLGKSAFTSEHV
CCCCEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCHHHHCHHHHHHHHH
KEGEFGVFLEFVKQGRVPKGSVLLVESLDRLSRESVLTAFKQFQEILDAGIKIVTLSDKM
CCCCHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHH
EYTKEGFEANIGNIFISLGIMARANEESLRKSERICAAWRLKRKNLHNIKLTANCPGWLE
HHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEE
LTPDKKDFILKEDRVEIVKQIFELSLSGLGVKAISTILNKQKIEPFRSKIGWYQTTVRKI
ECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LSNSAVIGEFQPHVFGSKHSKPVPDGELIKDYFPPIIDTDTFYAVQAKLKNGAHRPGRTA
HCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCH
KVENLFSGYTRCGYCGSRMDVVARHNVGGEVRYLVCDSARRGVKCSYISMKCNEIEKAFF
HHHHHHHHHHHHCCCCCCHHEEEECCCCCCEEEEEECCCCCCCEEEEEECHHHHHHHHHH
EYCREIDIRYVLRAEQQADQNRLNELRKSLTARNGKLMKVQKQIDMLNVFLDDITERAEL
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHH
EHYHEQIKKKLEEKTNLSEEIEKLSKGICIAEYDNNNIDVRVQNLLTLDKAQNKSVKEDD
HHHHHHHHHHHHHHCCHHHHHHHHHCCEEEEEECCCCEEEEEHHHHHHHHHCCCCCCCCC
KIMFRIRLRDELRQIISQILVYPRGSVFSDEQIEQKERDYEIKIKSASDSEKHILKHEKT
EEEEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEEEECCCCCHHHHHHCCCC
IDLDGMRQSQQNTKDDRFFVVRFKNGNYRTIKYDKKQQAYRVTSELINDKLNWWMGNKEM
CCCCCCHHHHCCCCCCEEEEEEEECCCEEEEEECCHHHHHHHHHHHHCCHHHEEECCCCC
APIFREEEELHPFETEFELDSN
CCHHCCHHHCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]