Click here to switch to the map view.

The map label for this gene is 78224222

Identifier: 78224222

GI number: 78224222

Start: 3414267

End: 3415064

Strand: Reverse

Name: 78224222

Synonym: Gmet_3029

Alternate gene names: NA

Gene position: 3415064-3414267 (Counterclockwise)

Preceding gene: 78224223

Following gene: 78224220

Centisome position: 85.43

GC content: 59.27

Gene sequence:

>798_bases
ATGCGGATATCCCTCTCCACCGGCACCCTCTTTACGTTTCCCCTCGGCAAGGTCATGGCCATTGCCCGGGATGCGGGGTT
CGACGGGGTGGAGCTCATCGTCAATCAGGACTTCCAGAAGGTCAACTGCCGCACCCTCATCCGGGAGCTTGCGGAAATCC
TGCCGATTCACTCCATGCACGCCCCCTTCATGCCCCTGGATGGCTGGGGAAGCTCCATCGACTCGCTGAAGCGGTGCGTG
GAACTCTCGGCCGACTGCGGCGTTCAGCTGGTGAATTTCCACCCCCCCTCGTGGATGGGGTTCGAACTGGGGTTCTGGCG
CTGGCTCTACCGGGTGATGGATTTCCAGAAGGAGGTGGGGCAGGGGGGGGTCATCGTCACCCTGGAGAACATGCCGTGGG
TGGGGAAACGGGTCAGGATGAACCCCCATATCCTCTCCAGCACGACGAAGTTCATCGACTTCATCCAGGAGCGCAACCTT
TTCATGACCTTCGACACCACCCACATGGGGTCGGGGAAGGCCAACTTCATCAACGACTTCTATCTCTGTTACAACAGCGG
CCGGATCAGGAACATCCACTTCTCAGACTATGGCCACGGTCGCGAGCACCTGCTGCCGGGACACGGCATCCTTCCTCTTA
CCCGCTTTCTCAATCATCTGCGCAGCACCGGCTACAACGATACCCTGACCCTCGAACTCTCCCCCGAAGAGTTTCCCCGC
GACGAACGGATCATCGTTGAAAGCCTCAGGGAAATTCTCTCCTATCTCCGCAAGGAGACCGAACACCCTATCCCCTGA

Upstream 100 bases:

>100_bases
TCGGAGAGGATGCCGAGCGCGAGCTTCACGCGAGCCTCGAAGCGGTGGGAAGCCTCCAGAAGATCGTTTACAGCAGTATC
AGTGGGCAGGGGTAGGCGGG

Downstream 100 bases:

>100_bases
CGATGTAGACCGAGCAGGGGGAGTTCTTCACCACCTTGTGGGAAACGCTTCCCAGAAGTTTCCGTTTCAGGAATCCCTTC
CCCGAACTACCGATCACGAT

Product: xylose isomerase-like TIM barrel

Products: NA

Alternate protein names: Xylose Isomerase Domain-Containing Protein TIM Barrel; Xylose Isomerase-Like TIM Barrel; TIM Alpha/Beta-Barrel Protein; Xylose Isomerase Domain-Containing Protein; Sugar Phosphate Isomerase/Epimerase; Endonuclease IV

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MRISLSTGTLFTFPLGKVMAIARDAGFDGVELIVNQDFQKVNCRTLIRELAEILPIHSMHAPFMPLDGWGSSIDSLKRCV
ELSADCGVQLVNFHPPSWMGFELGFWRWLYRVMDFQKEVGQGGVIVTLENMPWVGKRVRMNPHILSSTTKFIDFIQERNL
FMTFDTTHMGSGKANFINDFYLCYNSGRIRNIHFSDYGHGREHLLPGHGILPLTRFLNHLRSTGYNDTLTLELSPEEFPR
DERIIVESLREILSYLRKETEHPIP

Sequences:

>Translated_265_residues
MRISLSTGTLFTFPLGKVMAIARDAGFDGVELIVNQDFQKVNCRTLIRELAEILPIHSMHAPFMPLDGWGSSIDSLKRCV
ELSADCGVQLVNFHPPSWMGFELGFWRWLYRVMDFQKEVGQGGVIVTLENMPWVGKRVRMNPHILSSTTKFIDFIQERNL
FMTFDTTHMGSGKANFINDFYLCYNSGRIRNIHFSDYGHGREHLLPGHGILPLTRFLNHLRSTGYNDTLTLELSPEEFPR
DERIIVESLREILSYLRKETEHPIP
>Mature_265_residues
MRISLSTGTLFTFPLGKVMAIARDAGFDGVELIVNQDFQKVNCRTLIRELAEILPIHSMHAPFMPLDGWGSSIDSLKRCV
ELSADCGVQLVNFHPPSWMGFELGFWRWLYRVMDFQKEVGQGGVIVTLENMPWVGKRVRMNPHILSSTTKFIDFIQERNL
FMTFDTTHMGSGKANFINDFYLCYNSGRIRNIHFSDYGHGREHLLPGHGILPLTRFLNHLRSTGYNDTLTLELSPEEFPR
DERIIVESLREILSYLRKETEHPIP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30505; Mature: 30505

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRISLSTGTLFTFPLGKVMAIARDAGFDGVELIVNQDFQKVNCRTLIRELAEILPIHSMH
CEEECCCCCEEEECHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCC
APFMPLDGWGSSIDSLKRCVELSADCGVQLVNFHPPSWMGFELGFWRWLYRVMDFQKEVG
CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
QGGVIVTLENMPWVGKRVRMNPHILSSTTKFIDFIQERNLFMTFDTTHMGSGKANFINDF
CCCEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHEEE
YLCYNSGRIRNIHFSDYGHGREHLLPGHGILPLTRFLNHLRSTGYNDTLTLELSPEEFPR
EEEECCCEEEEEEECCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHCCC
DERIIVESLREILSYLRKETEHPIP
CHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRISLSTGTLFTFPLGKVMAIARDAGFDGVELIVNQDFQKVNCRTLIRELAEILPIHSMH
CEEECCCCCEEEECHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCC
APFMPLDGWGSSIDSLKRCVELSADCGVQLVNFHPPSWMGFELGFWRWLYRVMDFQKEVG
CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
QGGVIVTLENMPWVGKRVRMNPHILSSTTKFIDFIQERNLFMTFDTTHMGSGKANFINDF
CCCEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHEEE
YLCYNSGRIRNIHFSDYGHGREHLLPGHGILPLTRFLNHLRSTGYNDTLTLELSPEEFPR
EEEECCCEEEEEEECCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHCCC
DERIIVESLREILSYLRKETEHPIP
CHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA