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The map label for this gene is yebA [H]

Identifier: 78224205

GI number: 78224205

Start: 3396616

End: 3397215

Strand: Reverse

Name: yebA [H]

Synonym: Gmet_3012

Alternate gene names: 78224205

Gene position: 3397215-3396616 (Counterclockwise)

Preceding gene: 78224215

Following gene: 78224198

Centisome position: 84.99

GC content: 67.33

Gene sequence:

>600_bases
ATGAAACTAATAATCTCCGCAATCCTTTTCCTTCTCCTCCTTCCCGCCTTTGCCGCCGCCTCCCGTCAGCTCCCCGTGGA
CGGCGGCACTGTCACCTCCGGCATTGGCTGGCGCCTCGACCCCTTCGGCAGCGGCCGGATGACCTATCACCAGGGGGTCG
ACATCGCCGTCCCCGAGGGGACCCCGGTCTACCCCACCCAGCGGGGGACCGTCACCTTCGCCGGTCCCTACAAGGGGTAC
GGCAACCTGGTGGCCGTGGATCACGGCAACGGCTACGTGACCCTGTACGGCCACAACTCGACGATTCGCGTCACCCCGGG
GCAGGCGGTGGATACGAAAACCGTCCTCGCCCTGGCGGGGAGCACGGGGCGCTCCACCGGCCCCCACGTCCACTACGAGG
TGCGGCAGATCCCCGGTTATGACAAGAAGGCGCGGGAGCGGCTGGAGGAGCAGCTGAAGGCCCTGGTGGCCGAGAAGGTC
AATGGCTGGGTCGAGGAGTATGTTGCCAAGGGTGAGGGTGACGAAGGGGGGAACCCGGAGGAACCCCGGCAGCACCCCCT
GGCCGGACTGGCCCTGCCTGGGGGCGAGGAACTGCCGTAA

Upstream 100 bases:

>100_bases
ATGGGCCCATTCTGGCGGCCATGTTCTGCCTGTTCGTCCTCTCCCTCGTTCTTATCGCGTACGGCCTCGCCAAGTAGCCG
GACCTGTTGGTGAAAACCCC

Downstream 100 bases:

>100_bases
GCTCTGCTGGAACTCCCTGGGGGAGGGCTTTCACCGCTCGATGGTTTTGAAGATGGCGGAGAAATCCTCGTCGCCGAAGC
CGGCGGCCCTGGCCCCCTTG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MKLIISAILFLLLLPAFAAASRQLPVDGGTVTSGIGWRLDPFGSGRMTYHQGVDIAVPEGTPVYPTQRGTVTFAGPYKGY
GNLVAVDHGNGYVTLYGHNSTIRVTPGQAVDTKTVLALAGSTGRSTGPHVHYEVRQIPGYDKKARERLEEQLKALVAEKV
NGWVEEYVAKGEGDEGGNPEEPRQHPLAGLALPGGEELP

Sequences:

>Translated_199_residues
MKLIISAILFLLLLPAFAAASRQLPVDGGTVTSGIGWRLDPFGSGRMTYHQGVDIAVPEGTPVYPTQRGTVTFAGPYKGY
GNLVAVDHGNGYVTLYGHNSTIRVTPGQAVDTKTVLALAGSTGRSTGPHVHYEVRQIPGYDKKARERLEEQLKALVAEKV
NGWVEEYVAKGEGDEGGNPEEPRQHPLAGLALPGGEELP
>Mature_199_residues
MKLIISAILFLLLLPAFAAASRQLPVDGGTVTSGIGWRLDPFGSGRMTYHQGVDIAVPEGTPVYPTQRGTVTFAGPYKGY
GNLVAVDHGNGYVTLYGHNSTIRVTPGQAVDTKTVLALAGSTGRSTGPHVHYEVRQIPGYDKKARERLEEQLKALVAEKV
NGWVEEYVAKGEGDEGGNPEEPRQHPLAGLALPGGEELP

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=97, Percent_Identity=48.4536082474227, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI87082174, Length=87, Percent_Identity=37.9310344827586, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789099, Length=87, Percent_Identity=37.9310344827586, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 21215; Mature: 21215

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLIISAILFLLLLPAFAAASRQLPVDGGTVTSGIGWRLDPFGSGRMTYHQGVDIAVPEG
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEECCCCCCCEEEECCCEEECCCC
TPVYPTQRGTVTFAGPYKGYGNLVAVDHGNGYVTLYGHNSTIRVTPGQAVDTKTVLALAG
CCCCCCCCCEEEECCCCCCCCCEEEEECCCCEEEEEECCCEEEECCCCCCCCEEEEEEEC
STGRSTGPHVHYEVRQIPGYDKKARERLEEQLKALVAEKVNGWVEEYVAKGEGDEGGNPE
CCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
EPRQHPLAGLALPGGEELP
CCCCCCCEEEECCCCCCCC
>Mature Secondary Structure
MKLIISAILFLLLLPAFAAASRQLPVDGGTVTSGIGWRLDPFGSGRMTYHQGVDIAVPEG
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEECCCCCCCEEEECCCEEECCCC
TPVYPTQRGTVTFAGPYKGYGNLVAVDHGNGYVTLYGHNSTIRVTPGQAVDTKTVLALAG
CCCCCCCCCEEEECCCCCCCCCEEEEECCCCEEEEEECCCEEEECCCCCCCCEEEEEEEC
STGRSTGPHVHYEVRQIPGYDKKARERLEEQLKALVAEKVNGWVEEYVAKGEGDEGGNPE
CCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
EPRQHPLAGLALPGGEELP
CCCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]