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The map label for this gene is ccsA [H]

Identifier: 78224096

GI number: 78224096

Start: 3282926

End: 3283780

Strand: Reverse

Name: ccsA [H]

Synonym: Gmet_2900

Alternate gene names: 78224096

Gene position: 3283780-3282926 (Counterclockwise)

Preceding gene: 78224097

Following gene: 78224095

Centisome position: 82.15

GC content: 57.08

Gene sequence:

>855_bases
ATGACCAGTTCCATGCTGTTCAATATCGCAACTTTTTCCTATCTGATTTCCATGCTCGCCTTCTTCACCTTCCTGGCGGT
GAAGGGGAAGTCCGTGGGACTTGTCGGAAGTCTGGCGGCATACTTTGGCTTCATCGTCCACTCCGCCGCGATTCTGCTTC
GCTGGAAGGAGTCCTATGACATCGGGATGGGCCATGCCCCCCTCTCGAACCTCTACGAGTCGGTCGTCTTTTTCGCCTGG
ACCATCATCCTTATCTTCGGAATCATTGATCTCAAGTACAAATACCGGGTCGTGGGCGCCTTCGTGGTTCCCTTTGCTCT
TCTCGGTATGGCCTGGGCCCAGTTGGGGATGGACAGCGGCATCCAGCCGCTGGTGCCGGCGCTGCAGAGCAACTGGCTCC
TCTACCACGTCATTACCTGCTTCCTGGGGTATGCCGCTTTCGCGGTGGCCTGCGGCATCTCTATCATGTACCTGATCAAG
GCGGGCAAGGATGAGTCGGCGGGGAGCGCCCAGTCCGGCGGAATAATCGCCATGTTTCCCTCCATCAAGATTCTCGATGA
CCTTAACTATAAGGCGATCATCATCGGCTTTCCGCTCCTTACTCTCGGCATCATAACCGGCGCCGCCTGGGCCAACTACG
CCTGGGGTACCTACTGGAGCTGGGACCCGAAGGAAACCTGGTCCCTCATCGTCTGGTTCATCTACGCTGCTTTCCTCCAT
GCCCGCTTCACCCGCGGGTGGGTCGGCAAGAAGGCGGCCATCCTTTCCATTGTCGGATTTGCCGCAACAATTTTCTGCTA
TCTCGGGGTTAACCTTTTCCTTTCCGGGCTCCACAGCTACGGTGGAGGAGGGTAG

Upstream 100 bases:

>100_bases
CCTTGGCGGCAGCGCAAACAAGAACCAACCGGGCTTCCAGCTTGCTTTTGACGCGCTGGTCGACAAGCTGAAACAACAGT
AACAGGCGGAGGACCACTCA

Downstream 100 bases:

>100_bases
CCTTCTCAAAGGGAATCACCTCTCCATGCCCGGACTGCGATATTTCACAGGCCGGGTTTTTTGTGTCGCGCCTCTGGACG
GCAGCCATTTTGCATCAAGA

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MTSSMLFNIATFSYLISMLAFFTFLAVKGKSVGLVGSLAAYFGFIVHSAAILLRWKESYDIGMGHAPLSNLYESVVFFAW
TIILIFGIIDLKYKYRVVGAFVVPFALLGMAWAQLGMDSGIQPLVPALQSNWLLYHVITCFLGYAAFAVACGISIMYLIK
AGKDESAGSAQSGGIIAMFPSIKILDDLNYKAIIIGFPLLTLGIITGAAWANYAWGTYWSWDPKETWSLIVWFIYAAFLH
ARFTRGWVGKKAAILSIVGFAATIFCYLGVNLFLSGLHSYGGGG

Sequences:

>Translated_284_residues
MTSSMLFNIATFSYLISMLAFFTFLAVKGKSVGLVGSLAAYFGFIVHSAAILLRWKESYDIGMGHAPLSNLYESVVFFAW
TIILIFGIIDLKYKYRVVGAFVVPFALLGMAWAQLGMDSGIQPLVPALQSNWLLYHVITCFLGYAAFAVACGISIMYLIK
AGKDESAGSAQSGGIIAMFPSIKILDDLNYKAIIIGFPLLTLGIITGAAWANYAWGTYWSWDPKETWSLIVWFIYAAFLH
ARFTRGWVGKKAAILSIVGFAATIFCYLGVNLFLSGLHSYGGGG
>Mature_283_residues
TSSMLFNIATFSYLISMLAFFTFLAVKGKSVGLVGSLAAYFGFIVHSAAILLRWKESYDIGMGHAPLSNLYESVVFFAWT
IILIFGIIDLKYKYRVVGAFVVPFALLGMAWAQLGMDSGIQPLVPALQSNWLLYHVITCFLGYAAFAVACGISIMYLIKA
GKDESAGSAQSGGIIAMFPSIKILDDLNYKAIIIGFPLLTLGIITGAAWANYAWGTYWSWDPKETWSLIVWFIYAAFLHA
RFTRGWVGKKAAILSIVGFAATIFCYLGVNLFLSGLHSYGGGG

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 31016; Mature: 30885

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSMLFNIATFSYLISMLAFFTFLAVKGKSVGLVGSLAAYFGFIVHSAAILLRWKESYD
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCC
IGMGHAPLSNLYESVVFFAWTIILIFGIIDLKYKYRVVGAFVVPFALLGMAWAQLGMDSG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
IQPLVPALQSNWLLYHVITCFLGYAAFAVACGISIMYLIKAGKDESAGSAQSGGIIAMFP
CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECC
SIKILDDLNYKAIIIGFPLLTLGIITGAAWANYAWGTYWSWDPKETWSLIVWFIYAAFLH
CEEEECCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ARFTRGWVGKKAAILSIVGFAATIFCYLGVNLFLSGLHSYGGGG
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TSSMLFNIATFSYLISMLAFFTFLAVKGKSVGLVGSLAAYFGFIVHSAAILLRWKESYD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCC
IGMGHAPLSNLYESVVFFAWTIILIFGIIDLKYKYRVVGAFVVPFALLGMAWAQLGMDSG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
IQPLVPALQSNWLLYHVITCFLGYAAFAVACGISIMYLIKAGKDESAGSAQSGGIIAMFP
CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECC
SIKILDDLNYKAIIIGFPLLTLGIITGAAWANYAWGTYWSWDPKETWSLIVWFIYAAFLH
CEEEECCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ARFTRGWVGKKAAILSIVGFAATIFCYLGVNLFLSGLHSYGGGG
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA