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The map label for this gene is yabB [H]

Identifier: 78224072

GI number: 78224072

Start: 3255570

End: 3256337

Strand: Reverse

Name: yabB [H]

Synonym: Gmet_2876

Alternate gene names: 78224072

Gene position: 3256337-3255570 (Counterclockwise)

Preceding gene: 78224073

Following gene: 78224069

Centisome position: 81.46

GC content: 59.9

Gene sequence:

>768_bases
GTGAAGGCTGACGAGACCATAGACGAACTGCAGACCTACGACCTGCGGATTGCTCAAGAGCGTCATGGATACCGGTTTTC
CCTCGACCCGCTGCTCCTCTGCGCTTTTGCCGCCCCGCAAGTTGGGGCACGGGTCATTGATCTGGGAACCGGCAGCGCCG
TCATCCCGCTCGTCCTCGCCCGTCGGACCGTGCAAGCCACTTTTGTGGGGGTGGAACTCCAGGAAGGACTGGCCACATTG
GCAGAGCGCAACGTAGCGTTGAACGGGCTCGTCGACCGGATATCCATTCTCTGTGATGATGTCCTCGGGTTGCGCAAGCG
TTTTCCCGTTTCCTCCTTTGACGTGGTCGTTTCCAACCCCCCCTACCGCAAGCGCGGAACGGGGAAGGTAAGCCCCAAGG
TGGGACGCGATGATGCCCGCCATGAGTCATCGGCAACCCTCGCCGACTTCCTTGCTGCTGCCAAGTACCTGGTGAATCCC
ACCGGCCGCATCTGTTTCATCTATCACCCGTCGCGGCTTCCGGAGCTTTTCTCGGAGGCGCATGTCCAGAAACTTGCATC
CATGAGACTGCGTCTTGTACATGGGACCTCAGACGCTGAGGCCCGAATGGCCCTCATCGAGTTTTGCAAGGGACGCAGGG
CGGATTTGAAGGTGCTTCCACCCCTGATTGTCAGGGGAGATGGGCTGGGCTACACCCCCGAGGTCGCTGAGATTCTGGGT
GGTGACAGGCAAGGAGATTGCCGGCAGTCAGTAAAAGCGTCGGGATAG

Upstream 100 bases:

>100_bases
CCGCTCCCCTTTAAAGTCGGCAAGTATCTTACACTTGCCTCTCTTGCGCTGTTTGCCGTCATGCTGGGACGTGAATGGCG
GTTGCGTAAACGGGTGAAGA

Downstream 100 bases:

>100_bases
GGACGTTACGCTTCGTCCGGTGGCGACGATGCGAGGTGTCGTGCCATGAGGCGGGAGATGATGGCGCGGAGTTCAGGGTC
TTCGATGGATTCGGTCTCTT

Product: putative RNA methylase:methyltransferase small

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MKADETIDELQTYDLRIAQERHGYRFSLDPLLLCAFAAPQVGARVIDLGTGSAVIPLVLARRTVQATFVGVELQEGLATL
AERNVALNGLVDRISILCDDVLGLRKRFPVSSFDVVVSNPPYRKRGTGKVSPKVGRDDARHESSATLADFLAAAKYLVNP
TGRICFIYHPSRLPELFSEAHVQKLASMRLRLVHGTSDAEARMALIEFCKGRRADLKVLPPLIVRGDGLGYTPEVAEILG
GDRQGDCRQSVKASG

Sequences:

>Translated_255_residues
MKADETIDELQTYDLRIAQERHGYRFSLDPLLLCAFAAPQVGARVIDLGTGSAVIPLVLARRTVQATFVGVELQEGLATL
AERNVALNGLVDRISILCDDVLGLRKRFPVSSFDVVVSNPPYRKRGTGKVSPKVGRDDARHESSATLADFLAAAKYLVNP
TGRICFIYHPSRLPELFSEAHVQKLASMRLRLVHGTSDAEARMALIEFCKGRRADLKVLPPLIVRGDGLGYTPEVAEILG
GDRQGDCRQSVKASG
>Mature_255_residues
MKADETIDELQTYDLRIAQERHGYRFSLDPLLLCAFAAPQVGARVIDLGTGSAVIPLVLARRTVQATFVGVELQEGLATL
AERNVALNGLVDRISILCDDVLGLRKRFPVSSFDVVVSNPPYRKRGTGKVSPKVGRDDARHESSATLADFLAAAKYLVNP
TGRICFIYHPSRLPELFSEAHVQKLASMRLRLVHGTSDAEARMALIEFCKGRRADLKVLPPLIVRGDGLGYTPEVAEILG
GDRQGDCRQSVKASG

Specific function: Unknown

COG id: COG4123

COG function: function code R; Predicted O-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082131, Length=190, Percent_Identity=28.4210526315789, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007848 [H]

Pfam domain/function: PF05175 MTS [H]

EC number: NA

Molecular weight: Translated: 27823; Mature: 27823

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKADETIDELQTYDLRIAQERHGYRFSLDPLLLCAFAAPQVGARVIDLGTGSAVIPLVLA
CCCCHHHHHHHHHHHHEEHHCCCCEEECCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
RRTVQATFVGVELQEGLATLAERNVALNGLVDRISILCDDVLGLRKRFPVSSFDVVVSNP
HHHHHHHEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
PYRKRGTGKVSPKVGRDDARHESSATLADFLAAAKYLVNPTGRICFIYHPSRLPELFSEA
CCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHH
HVQKLASMRLRLVHGTSDAEARMALIEFCKGRRADLKVLPPLIVRGDGLGYTPEVAEILG
HHHHHHHHHEEEEECCCCHHHHHHHHHHHCCCCCCCEECCCEEEECCCCCCCHHHHHHHC
GDRQGDCRQSVKASG
CCCCCHHHHHHCCCC
>Mature Secondary Structure
MKADETIDELQTYDLRIAQERHGYRFSLDPLLLCAFAAPQVGARVIDLGTGSAVIPLVLA
CCCCHHHHHHHHHHHHEEHHCCCCEEECCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
RRTVQATFVGVELQEGLATLAERNVALNGLVDRISILCDDVLGLRKRFPVSSFDVVVSNP
HHHHHHHEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
PYRKRGTGKVSPKVGRDDARHESSATLADFLAAAKYLVNPTGRICFIYHPSRLPELFSEA
CCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHH
HVQKLASMRLRLVHGTSDAEARMALIEFCKGRRADLKVLPPLIVRGDGLGYTPEVAEILG
HHHHHHHHHEEEEECCCCHHHHHHHHHHHCCCCCCCEECCCEEEECCCCCCCHHHHHHHC
GDRQGDCRQSVKASG
CCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]