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The map label for this gene is ctpA [H]

Identifier: 78223909

GI number: 78223909

Start: 3064127

End: 3065500

Strand: Reverse

Name: ctpA [H]

Synonym: Gmet_2713

Alternate gene names: 78223909

Gene position: 3065500-3064127 (Counterclockwise)

Preceding gene: 78223911

Following gene: 78223895

Centisome position: 76.69

GC content: 63.32

Gene sequence:

>1374_bases
ATGGTGCAGACGAGAACGAAGATTACCCTGGGACTCATGGCTGTGATTGCCTGCCTCGCCTTCGGCGGTGCCACCCTCTG
GCGGCTTGCCGCAACCGCCCCCGACCGTGAAGGGGTGGCTTCCCTGAAGCTTTTGGCCGAAGTGCTCCGCCAAGTGGAAG
AGAACTACGTGGAGAGGGTGGACCGGAAGAAGCTTCTGGAAGGGGCCGTCAACGGGATGCTCGCCGCCCTCGATCCCCAC
AGTGCCTATCTACCTCCCGAGCCGTTCTCGGAGATGAAGGTGGAGATATCCGGCTCTTTCGGCGGCCTCGGTATCGAGAT
TGCCCTGAAGGAGGGAAAGCTCACGGTTATTTCACCCATTGAGGATACCCCCGCCTGGCGGGCCGGCATCAAGGCCGGAG
ACCATATCTGGAAGATCGACGGCACCCCCACCCGCGACCTCACCATCGTTCAGGCGGTGAAAAAAATGCGGGGGGAGCGG
GGGACGAAGGTGACTCTCACGATCCTGCGCAATGGCGAAACGGAGCCCCGGGAGTTTCCCCTCGTGCGGGACATTATCCA
GACCAAGAGCCTCAAGGCCAGGAGCCTGGAGCCCGGGTACGGCTATGTGCGGATCAGCCACTTCCAGGAGCGGACCGGAG
AGGATTTCGCCAATGCCCTGCGGAACCTCAGGGCCGAGAACGGCGGTACTCTCAAGGGGCTCGTGCTCGACCTGCGCAAC
AACCCCGGCGGGCTTCTGGAGGTGGCGGTGGCGGTGGCCGGCCGCTTCGTGGGTGAGCGGCTCGACAATGGCCTCATCGT
CTACACCGAGGGGCGCGAGGAGTTCGCCAAGCGGCGTTTCAGTGCCACCGTCGGCGAGAAGGAACCCCCGTATCCCCTGG
TGGTGCTCATCAACAGCGGCAGCGCCAGTGCCTCGGAGATCGTGGCCGGCGCGCTGCAGGACTATGGCCGGGCTGTCATC
ATGGGAACCCCCAGCTTCGGCAAGGGGTCGGTCCAGACCGTAATCCCCATGAAGGACGGCGCCGGGCTCAAGCTCACCAC
GGCCCTCTACTACACTCCCAAGGGGCGCTCCATCCAGGCTAGGGGAATCATACCCGACGTCATCGTGGAGAATGCCGAAC
TGAAGAGCGTGACCAAGGACAGGCGGGAGGACTTCCACGAGAAGGATCTGGACAATCACCTGGGGGGAGGGAAGGACGCG
GTTCCCGCAAAGGGGCCGATTGAAAAGAACGAGGAGAGTGGGAAAAAGGGGCAACCCGCACGGCACGCCGTTGGGCCGGA
GGATGATGCGAAGAAGGACTTTCAGCTCGCCCGTGCCCTGGATCTCCTGAAGAGCTGGGAGGTGCTGCAGAAGGTGGCGG
GGGGGATCAAGTAA

Upstream 100 bases:

>100_bases
TCCCGGCGATTGACAAGAGAAGACCGGGGCACTACAGTAGGTGTCATTATGCCGGTTCGGCCGCAGCTGGCAGCCGGTGC
CGCCGACGGATGGAGATTCG

Downstream 100 bases:

>100_bases
TTACAGCGTGAAGTAAAAGGTTGCTCCCTTTCCGACCTCTCCCTCGCCCCGGATACTTCCCCCATGCCGCTGGATGATGC
GCTGAACCGTGGCAAGGCCG

Product: peptidase S41A, C-terminal protease

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 457; Mature: 457

Protein sequence:

>457_residues
MVQTRTKITLGLMAVIACLAFGGATLWRLAATAPDREGVASLKLLAEVLRQVEENYVERVDRKKLLEGAVNGMLAALDPH
SAYLPPEPFSEMKVEISGSFGGLGIEIALKEGKLTVISPIEDTPAWRAGIKAGDHIWKIDGTPTRDLTIVQAVKKMRGER
GTKVTLTILRNGETEPREFPLVRDIIQTKSLKARSLEPGYGYVRISHFQERTGEDFANALRNLRAENGGTLKGLVLDLRN
NPGGLLEVAVAVAGRFVGERLDNGLIVYTEGREEFAKRRFSATVGEKEPPYPLVVLINSGSASASEIVAGALQDYGRAVI
MGTPSFGKGSVQTVIPMKDGAGLKLTTALYYTPKGRSIQARGIIPDVIVENAELKSVTKDRREDFHEKDLDNHLGGGKDA
VPAKGPIEKNEESGKKGQPARHAVGPEDDAKKDFQLARALDLLKSWEVLQKVAGGIK

Sequences:

>Translated_457_residues
MVQTRTKITLGLMAVIACLAFGGATLWRLAATAPDREGVASLKLLAEVLRQVEENYVERVDRKKLLEGAVNGMLAALDPH
SAYLPPEPFSEMKVEISGSFGGLGIEIALKEGKLTVISPIEDTPAWRAGIKAGDHIWKIDGTPTRDLTIVQAVKKMRGER
GTKVTLTILRNGETEPREFPLVRDIIQTKSLKARSLEPGYGYVRISHFQERTGEDFANALRNLRAENGGTLKGLVLDLRN
NPGGLLEVAVAVAGRFVGERLDNGLIVYTEGREEFAKRRFSATVGEKEPPYPLVVLINSGSASASEIVAGALQDYGRAVI
MGTPSFGKGSVQTVIPMKDGAGLKLTTALYYTPKGRSIQARGIIPDVIVENAELKSVTKDRREDFHEKDLDNHLGGGKDA
VPAKGPIEKNEESGKKGQPARHAVGPEDDAKKDFQLARALDLLKSWEVLQKVAGGIK
>Mature_457_residues
MVQTRTKITLGLMAVIACLAFGGATLWRLAATAPDREGVASLKLLAEVLRQVEENYVERVDRKKLLEGAVNGMLAALDPH
SAYLPPEPFSEMKVEISGSFGGLGIEIALKEGKLTVISPIEDTPAWRAGIKAGDHIWKIDGTPTRDLTIVQAVKKMRGER
GTKVTLTILRNGETEPREFPLVRDIIQTKSLKARSLEPGYGYVRISHFQERTGEDFANALRNLRAENGGTLKGLVLDLRN
NPGGLLEVAVAVAGRFVGERLDNGLIVYTEGREEFAKRRFSATVGEKEPPYPLVVLINSGSASASEIVAGALQDYGRAVI
MGTPSFGKGSVQTVIPMKDGAGLKLTTALYYTPKGRSIQARGIIPDVIVENAELKSVTKDRREDFHEKDLDNHLGGGKDA
VPAKGPIEKNEESGKKGQPARHAVGPEDDAKKDFQLARALDLLKSWEVLQKVAGGIK

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=379, Percent_Identity=29.287598944591, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 49516; Mature: 49516

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQTRTKITLGLMAVIACLAFGGATLWRLAATAPDREGVASLKLLAEVLRQVEENYVERV
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
DRKKLLEGAVNGMLAALDPHSAYLPPEPFSEMKVEISGSFGGLGIEIALKEGKLTVISPI
HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCEEEECCC
EDTPAWRAGIKAGDHIWKIDGTPTRDLTIVQAVKKMRGERGTKVTLTILRNGETEPREFP
CCCCHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHCH
LVRDIIQTKSLKARSLEPGYGYVRISHFQERTGEDFANALRNLRAENGGTLKGLVLDLRN
HHHHHHHHCCCCCCCCCCCCCEEEEECHHHHCCHHHHHHHHHHHCCCCCEEEEEEEEECC
NPGGLLEVAVAVAGRFVGERLDNGLIVYTEGREEFAKRRFSATVGEKEPPYPLVVLINSG
CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCEEEEECCC
SASASEIVAGALQDYGRAVIMGTPSFGKGSVQTVIPMKDGAGLKLTTALYYTPKGRSIQA
CCCHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCEEEE
RGIIPDVIVENAELKSVTKDRREDFHEKDLDNHLGGGKDAVPAKGPIEKNEESGKKGQPA
CCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
RHAVGPEDDAKKDFQLARALDLLKSWEVLQKVAGGIK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVQTRTKITLGLMAVIACLAFGGATLWRLAATAPDREGVASLKLLAEVLRQVEENYVERV
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
DRKKLLEGAVNGMLAALDPHSAYLPPEPFSEMKVEISGSFGGLGIEIALKEGKLTVISPI
HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCEEEECCC
EDTPAWRAGIKAGDHIWKIDGTPTRDLTIVQAVKKMRGERGTKVTLTILRNGETEPREFP
CCCCHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHCH
LVRDIIQTKSLKARSLEPGYGYVRISHFQERTGEDFANALRNLRAENGGTLKGLVLDLRN
HHHHHHHHCCCCCCCCCCCCCEEEEECHHHHCCHHHHHHHHHHHCCCCCEEEEEEEEECC
NPGGLLEVAVAVAGRFVGERLDNGLIVYTEGREEFAKRRFSATVGEKEPPYPLVVLINSG
CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCEEEEECCC
SASASEIVAGALQDYGRAVIMGTPSFGKGSVQTVIPMKDGAGLKLTTALYYTPKGRSIQA
CCCHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCEEEE
RGIIPDVIVENAELKSVTKDRREDFHEKDLDNHLGGGKDAVPAKGPIEKNEESGKKGQPA
CCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
RHAVGPEDDAKKDFQLARALDLLKSWEVLQKVAGGIK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]