| Definition | Geobacter metallireducens GS-15 chromosome, complete genome. |
|---|---|
| Accession | NC_007517 |
| Length | 3,997,420 |
Click here to switch to the map view.
The map label for this gene is trxA [H]
Identifier: 78223848
GI number: 78223848
Start: 2999607
End: 3000647
Strand: Reverse
Name: trxA [H]
Synonym: Gmet_2652
Alternate gene names: 78223848
Gene position: 3000647-2999607 (Counterclockwise)
Preceding gene: 78223849
Following gene: 78223847
Centisome position: 75.06
GC content: 62.06
Gene sequence:
>1041_bases ATGAAAAAAACCCTGCCACAGCTCGTCATTATGTCGGTTCTCTGCCTGCTGGCCGCTTTGCCGGCCTTGGCCCAGGAGGA GATTCCCGCCGCGGCCAAGGAGCGCTTTAAAGCGGGGCTGGCCCTGATCGAGAAGGCGGACAAATCGGCTGATTTCCTGG CCGCCCTGGCCGAGTTCGAGGCGGCCGCCGCCCTGGCCCCCACGTGGCCCGACAGCCACTACAACCTGGCGCAGCTGGCC GCCGAGTCGGACAAACCGGCCAAGGCCATCAAGGAGTATCGCGCCTATCTGGCCCTGAAACCGGACGCGGCCGACCGGGG CGCGGTCGAGGCGGAAATGGCGCGGATGAAGGAGCTGATCGCCCTGAAGCGGAAGGTGGGGCTGCCGGGGGTCACCTTTG CCGCCATGGCCGACGGCATCTGGGTGCTCCAGGTCCTGCCGGGGGCCGGCATCGAAAAAACCGGACTGAGGAAGGGACAC CAAATAGTTGGCGTTGGCGGCAAGCCGCTTGCGGGCAACAAACTGGAAGATCTTTTCAAGGCCATCGAAGCCAACAACAT TACCGACACAATGTCCAGAGGGTCCTCTGAGCGCATGTACAGCCGGATGACCCGCGACACCAAGACGCAGGGGCCGGTAG TCGTGCTCAATGTGAAGCAGTCCCGACAGCAGGAGAAGCCTTTTCTGATCCTCTGCAAGAAAGAGATGTTCCGCTCTAAA ATCATCGAGATCGAAGAGGACGAGTTCGAGGATGAAGTGCTCAAGGCGCCCCTGCCGGTGGCGGTCACCTTCTGGGGCGA TTCGTGCGAGCCGTGCAAGGAATTCGTCCCCGTTCTGGAGGCGGAAAGCGCCAAGTACGCCGGCAAGGTGAAATTCGTGA ACATCAACGTGGACGGGAACAGGAAGCTGGCTGACCAACTGGCGGTCAAGGAAGTCCCGGCCCTGATGGTGTACAAGGGG GGGAGTGCTGTAGCGACCGCGACCGGCAAGCTTCCAAGGGAGAAGGTTGCTGAGATGCTGCAGGACGCTGCCGGCAGGTA G
Upstream 100 bases:
>100_bases CCGTACTTTGTCGTTACCCCGCTGCAGATGCACAAAAATGACGGTAACAGCGATTGAAACCGGAGATGTCCCGCCCACTG GGCCGCGAAAGGATCAAACC
Downstream 100 bases:
>100_bases TTGAGAGAGAAAGAGAAGCGATGAACCCCGAATGGCTGGTGCCGTATCTGCTGGTCGCCCTGCTGGTTTTCCTGATGCCA AAAATATTCGGGATGCTGGG
Product: thioredoxin-related protein
Products: NA
Alternate protein names: Trx [H]
Number of amino acids: Translated: 346; Mature: 346
Protein sequence:
>346_residues MKKTLPQLVIMSVLCLLAALPALAQEEIPAAAKERFKAGLALIEKADKSADFLAALAEFEAAAALAPTWPDSHYNLAQLA AESDKPAKAIKEYRAYLALKPDAADRGAVEAEMARMKELIALKRKVGLPGVTFAAMADGIWVLQVLPGAGIEKTGLRKGH QIVGVGGKPLAGNKLEDLFKAIEANNITDTMSRGSSERMYSRMTRDTKTQGPVVVLNVKQSRQQEKPFLILCKKEMFRSK IIEIEEDEFEDEVLKAPLPVAVTFWGDSCEPCKEFVPVLEAESAKYAGKVKFVNINVDGNRKLADQLAVKEVPALMVYKG GSAVATATGKLPREKVAEMLQDAAGR
Sequences:
>Translated_346_residues MKKTLPQLVIMSVLCLLAALPALAQEEIPAAAKERFKAGLALIEKADKSADFLAALAEFEAAAALAPTWPDSHYNLAQLA AESDKPAKAIKEYRAYLALKPDAADRGAVEAEMARMKELIALKRKVGLPGVTFAAMADGIWVLQVLPGAGIEKTGLRKGH QIVGVGGKPLAGNKLEDLFKAIEANNITDTMSRGSSERMYSRMTRDTKTQGPVVVLNVKQSRQQEKPFLILCKKEMFRSK IIEIEEDEFEDEVLKAPLPVAVTFWGDSCEPCKEFVPVLEAESAKYAGKVKFVNINVDGNRKLADQLAVKEVPALMVYKG GSAVATATGKLPREKVAEMLQDAAGR >Mature_346_residues MKKTLPQLVIMSVLCLLAALPALAQEEIPAAAKERFKAGLALIEKADKSADFLAALAEFEAAAALAPTWPDSHYNLAQLA AESDKPAKAIKEYRAYLALKPDAADRGAVEAEMARMKELIALKRKVGLPGVTFAAMADGIWVLQVLPGAGIEKTGLRKGH QIVGVGGKPLAGNKLEDLFKAIEANNITDTMSRGSSERMYSRMTRDTKTQGPVVVLNVKQSRQQEKPFLILCKKEMFRSK IIEIEEDEFEDEVLKAPLPVAVTFWGDSCEPCKEFVPVLEAESAKYAGKVKFVNINVDGNRKLADQLAVKEVPALMVYKG GSAVATATGKLPREKVAEMLQDAAGR
Specific function: Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions [H]
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Escherichia coli, GI1788936, Length=112, Percent_Identity=30.3571428571429, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI87082331, Length=103, Percent_Identity=33.9805825242718, Blast_Score=80, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF00085 Thioredoxin [H]
EC number: 1.8.1.8 [C]
Molecular weight: Translated: 37507; Mature: 37507
Theoretical pI: Translated: 8.57; Mature: 8.57
Prosite motif: PS50106 PDZ ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTLPQLVIMSVLCLLAALPALAQEEIPAAAKERFKAGLALIEKADKSADFLAALAEFE CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH AAAALAPTWPDSHYNLAQLAAESDKPAKAIKEYRAYLALKPDAADRGAVEAEMARMKELI HHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHH ALKRKVGLPGVTFAAMADGIWVLQVLPGAGIEKTGLRKGHQIVGVGGKPLAGNKLEDLFK HHHHHCCCCCCHHHHHHCCEEEEEECCCCCCCHHHCCCCCEEEECCCCCCCCCHHHHHHH AIEANNITDTMSRGSSERMYSRMTRDTKTQGPVVVLNVKQSRQQEKPFLILCKKEMFRSK HHHCCCCHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEHHHHHHCCCEEEEECHHHHHHH IIEIEEDEFEDEVLKAPLPVAVTFWGDSCEPCKEFVPVLEAESAKYAGKVKFVNINVDGN CCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCC RKLADQLAVKEVPALMVYKGGSAVATATGKLPREKVAEMLQDAAGR HHHHHHHHHHHCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MKKTLPQLVIMSVLCLLAALPALAQEEIPAAAKERFKAGLALIEKADKSADFLAALAEFE CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH AAAALAPTWPDSHYNLAQLAAESDKPAKAIKEYRAYLALKPDAADRGAVEAEMARMKELI HHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHH ALKRKVGLPGVTFAAMADGIWVLQVLPGAGIEKTGLRKGHQIVGVGGKPLAGNKLEDLFK HHHHHCCCCCCHHHHHHCCEEEEEECCCCCCCHHHCCCCCEEEECCCCCCCCCHHHHHHH AIEANNITDTMSRGSSERMYSRMTRDTKTQGPVVVLNVKQSRQQEKPFLILCKKEMFRSK HHHCCCCHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEHHHHHHCCCEEEEECHHHHHHH IIEIEEDEFEDEVLKAPLPVAVTFWGDSCEPCKEFVPVLEAESAKYAGKVKFVNINVDGN CCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCC RKLADQLAVKEVPALMVYKGGSAVATATGKLPREKVAEMLQDAAGR HHHHHHHHHHHCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]