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The map label for this gene is nuc [H]

Identifier: 78223725

GI number: 78223725

Start: 2869419

End: 2869934

Strand: Reverse

Name: nuc [H]

Synonym: Gmet_2526

Alternate gene names: 78223725

Gene position: 2869934-2869419 (Counterclockwise)

Preceding gene: 78223726

Following gene: 78223719

Centisome position: 71.79

GC content: 57.95

Gene sequence:

>516_bases
ATGCGTATTGTGACGATCATCCTGGCCCTTGCAGTTTTCACTGCCGCCTCTTCCCTCTCGTACGCATCACCCTCGAAGAC
CCTTGAGGGGACTGTTGCCAAGGTTCTGGACGGTGACACGCTCTTGCTGCTGTCCGGTGCAAGAACCGTAAAGGTCCGGC
TGTTCGGTATCGATGCTCCCGAAGTTCGTCGAAAGTTGCGGCCGGGGCAACCCTTCGGTTCGGAAGCCAAGCAGGCTCTG
GAGAAAAAGGTTGCCGGGAAAAAGGTCGTCGTTGATGTGGTCGATGTGGACAAGAACCTTTTGGTCATCGGCGTGCTCAC
AACTGAGGGGCGGGATATCGACCGCGAGATGATAGAAGAGGGGTGGGCCTGGGCCTACCGGCAACGCCTCAGGGAGCCCT
TCACGTCACGGTATGTTTCCGCCGAGAATAAAGCGAGGAAAACGCGCCTGGGGCTGTGGAGGCAGGAAAACCCCCAGCCC
CCCTGGTCCTTCAGGTTTGAGCAGAAGATTCACTGA

Upstream 100 bases:

>100_bases
TTTTTTCTTTGATGATTTGTCCCCGATGTATGGATTCCATGCGTTACAGATTTATCAACCGCAGGCAGTTGCATCATTAA
TCCTGCACAGCGAGTAACTT

Downstream 100 bases:

>100_bases
GCATCTGTGGTTTCGCTGATGAGGGCGGTGAAAGCCGAGGAAGTATCCCACTGTCGATAGATGTGGTGACTCGAAAAGCA
GAAATGCTCTTGGGGCGGCC

Product: SNase-like nuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MRIVTIILALAVFTAASSLSYASPSKTLEGTVAKVLDGDTLLLLSGARTVKVRLFGIDAPEVRRKLRPGQPFGSEAKQAL
EKKVAGKKVVVDVVDVDKNLLVIGVLTTEGRDIDREMIEEGWAWAYRQRLREPFTSRYVSAENKARKTRLGLWRQENPQP
PWSFRFEQKIH

Sequences:

>Translated_171_residues
MRIVTIILALAVFTAASSLSYASPSKTLEGTVAKVLDGDTLLLLSGARTVKVRLFGIDAPEVRRKLRPGQPFGSEAKQAL
EKKVAGKKVVVDVVDVDKNLLVIGVLTTEGRDIDREMIEEGWAWAYRQRLREPFTSRYVSAENKARKTRLGLWRQENPQP
PWSFRFEQKIH
>Mature_171_residues
MRIVTIILALAVFTAASSLSYASPSKTLEGTVAKVLDGDTLLLLSGARTVKVRLFGIDAPEVRRKLRPGQPFGSEAKQAL
EKKVAGKKVVVDVVDVDKNLLVIGVLTTEGRDIDREMIEEGWAWAYRQRLREPFTSRYVSAENKARKTRLGLWRQENPQP
PWSFRFEQKIH

Specific function: Unknown

COG id: COG1525

COG function: function code L; Micrococcal nuclease (thermonuclease) homologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thermonuclease family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6321353, Length=125, Percent_Identity=32, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016071
- InterPro:   IPR006021
- InterPro:   IPR002071 [H]

Pfam domain/function: PF00565 SNase [H]

EC number: =3.1.31.1 [H]

Molecular weight: Translated: 19262; Mature: 19262

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: PS01123 TNASE_1 ; PS50830 TNASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIVTIILALAVFTAASSLSYASPSKTLEGTVAKVLDGDTLLLLSGARTVKVRLFGIDAP
CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCEEEEEEEECCCH
EVRRKLRPGQPFGSEAKQALEKKVAGKKVVVDVVDVDKNLLVIGVLTTEGRDIDREMIEE
HHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEEECCCCCCCHHHHHH
GWAWAYRQRLREPFTSRYVSAENKARKTRLGLWRQENPQPPWSFRFEQKIH
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRIVTIILALAVFTAASSLSYASPSKTLEGTVAKVLDGDTLLLLSGARTVKVRLFGIDAP
CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCEEEEEEEECCCH
EVRRKLRPGQPFGSEAKQALEKKVAGKKVVVDVVDVDKNLLVIGVLTTEGRDIDREMIEE
HHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEEECCCCCCCHHHHHH
GWAWAYRQRLREPFTSRYVSAENKARKTRLGLWRQENPQPPWSFRFEQKIH
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1560781 [H]