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The map label for this gene is 78223706

Identifier: 78223706

GI number: 78223706

Start: 2845490

End: 2846440

Strand: Reverse

Name: 78223706

Synonym: Gmet_2506

Alternate gene names: NA

Gene position: 2846440-2845490 (Counterclockwise)

Preceding gene: 78223707

Following gene: 78223698

Centisome position: 71.21

GC content: 63.62

Gene sequence:

>951_bases
ATGATTAGACTATCGTTCATGGAGTTGGAGACCGTACATACCGCACTTCGCCAGGAGCTATGGCTCCCCGTGGCGCCGGG
AGCATTGGAAGAGGGGAAGGCCCAACTCTGGGGGCTGGTCCTTGAGTCCCGGGCTGTCCCGTGCCGTAGTGTTCGGAGCG
ATAACGGATGGCACGTGGTGGTGCCGGCGTCATTCTACGACCGGGCCGTGGAGGAGGTGCGCCTCTTCGAAGAGGAAAAC
CGCAACTGGCCTCCGCCGGCACCACCGGTCAGGACCATGAACGGGAATGTCCTGGCGACTCTGTCAGTCCTCTTTCTCCT
GGCCACCTTTCACAACATCACCCGGCTTGATGTCACCCTCCCCGGTCATCCCCCGCTCGACTGGCTTGCCCTCGGCAGCG
CCGATGCCGCAAAGATCATGGATGGCCAGTGGTGGCGCGCAGTAACCGCCCTCACCCTCCATGCGAATCTGCCGCACCTT
GTGAGCAACCTTGCGATCGGCGGGGTGCTGGTCATCCTCCTCTGTCGCGAAATCGGTTCGGGCCTCGCCTGGAGCCTCAT
CCTTGGTTCGGGAATCCTCGGGAACCTCGTCAACGCGTTACTTCACTCCTCCGGCCACATTTCGGTCGGTGCTTCCACCG
CGGTATTCGGTGCGGTCGGCATCCTCGCCTCAAGCAGCGTGGTGCGCCATCGCCATCACCTGCAGAGACGGTGGCCGCTC
CCGGTTGCCGCCGGCCTGGCCCTCCTGGCGGTCCTTGGAACGGAAGGCGAACACACCGACCTTGGCGCGCACCTGTTTGG
ATTTTTGTGGGGGATAGCGCTTGGCGCCGTGGCGGAATATCTGATCGGCAGGTTCGGGCAGCCCGGTCCGGTCCTCAATG
CGGTGCTGGCAATTGCCAGTGCCGTGGGGGTGGTGTTCTCCTGGTGGGTGGCGCTTGCTGTTGCCCCGTAG

Upstream 100 bases:

>100_bases
ATTATCCTGAGCGCAACCAACTGAACTTATTCAACTATTAACCGGACAGTAGTGAGTCGCCCGTTTTTTTCTCGCCCATG
GGTCGCAATCAGGCTTCGCA

Downstream 100 bases:

>100_bases
GGGACGCCGGTCAATCCTTCTTTTTCGCGGTCAAGGCAGTATTTCGATCGGGGTGCCGTTTCGCACCAGGTGCCAAATTT
CCGTCATCTCGGCGTTGGTG

Product: rhomboid-like protein

Products: NA

Alternate protein names: Rhomboid-Like Membrane Protein; Ankyrin Membrane Protein; Rhomboid-Like Protein; Peptidase; Rhomboid Family Membrane Protein

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MIRLSFMELETVHTALRQELWLPVAPGALEEGKAQLWGLVLESRAVPCRSVRSDNGWHVVVPASFYDRAVEEVRLFEEEN
RNWPPPAPPVRTMNGNVLATLSVLFLLATFHNITRLDVTLPGHPPLDWLALGSADAAKIMDGQWWRAVTALTLHANLPHL
VSNLAIGGVLVILLCREIGSGLAWSLILGSGILGNLVNALLHSSGHISVGASTAVFGAVGILASSSVVRHRHHLQRRWPL
PVAAGLALLAVLGTEGEHTDLGAHLFGFLWGIALGAVAEYLIGRFGQPGPVLNAVLAIASAVGVVFSWWVALAVAP

Sequences:

>Translated_316_residues
MIRLSFMELETVHTALRQELWLPVAPGALEEGKAQLWGLVLESRAVPCRSVRSDNGWHVVVPASFYDRAVEEVRLFEEEN
RNWPPPAPPVRTMNGNVLATLSVLFLLATFHNITRLDVTLPGHPPLDWLALGSADAAKIMDGQWWRAVTALTLHANLPHL
VSNLAIGGVLVILLCREIGSGLAWSLILGSGILGNLVNALLHSSGHISVGASTAVFGAVGILASSSVVRHRHHLQRRWPL
PVAAGLALLAVLGTEGEHTDLGAHLFGFLWGIALGAVAEYLIGRFGQPGPVLNAVLAIASAVGVVFSWWVALAVAP
>Mature_316_residues
MIRLSFMELETVHTALRQELWLPVAPGALEEGKAQLWGLVLESRAVPCRSVRSDNGWHVVVPASFYDRAVEEVRLFEEEN
RNWPPPAPPVRTMNGNVLATLSVLFLLATFHNITRLDVTLPGHPPLDWLALGSADAAKIMDGQWWRAVTALTLHANLPHL
VSNLAIGGVLVILLCREIGSGLAWSLILGSGILGNLVNALLHSSGHISVGASTAVFGAVGILASSSVVRHRHHLQRRWPL
PVAAGLALLAVLGTEGEHTDLGAHLFGFLWGIALGAVAEYLIGRFGQPGPVLNAVLAIASAVGVVFSWWVALAVAP

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33801; Mature: 33801

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLSFMELETVHTALRQELWLPVAPGALEEGKAQLWGLVLESRAVPCRSVRSDNGWHVV
CEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEE
VPASFYDRAVEEVRLFEEENRNWPPPAPPVRTMNGNVLATLSVLFLLATFHNITRLDVTL
ECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEC
PGHPPLDWLALGSADAAKIMDGQWWRAVTALTLHANLPHLVSNLAIGGVLVILLCREIGS
CCCCCCHHEEECCCCHHHHHCCHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHCC
GLAWSLILGSGILGNLVNALLHSSGHISVGASTAVFGAVGILASSSVVRHRHHLQRRWPL
CHHHHHHHHCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PVAAGLALLAVLGTEGEHTDLGAHLFGFLWGIALGAVAEYLIGRFGQPGPVLNAVLAIAS
CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AVGVVFSWWVALAVAP
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRLSFMELETVHTALRQELWLPVAPGALEEGKAQLWGLVLESRAVPCRSVRSDNGWHVV
CEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEE
VPASFYDRAVEEVRLFEEENRNWPPPAPPVRTMNGNVLATLSVLFLLATFHNITRLDVTL
ECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEC
PGHPPLDWLALGSADAAKIMDGQWWRAVTALTLHANLPHLVSNLAIGGVLVILLCREIGS
CCCCCCHHEEECCCCHHHHHCCHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHCC
GLAWSLILGSGILGNLVNALLHSSGHISVGASTAVFGAVGILASSSVVRHRHHLQRRWPL
CHHHHHHHHCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PVAAGLALLAVLGTEGEHTDLGAHLFGFLWGIALGAVAEYLIGRFGQPGPVLNAVLAIAS
CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AVGVVFSWWVALAVAP
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA