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The map label for this gene is yuxH [H]

Identifier: 78223620

GI number: 78223620

Start: 2730634

End: 2731869

Strand: Reverse

Name: yuxH [H]

Synonym: Gmet_2417

Alternate gene names: 78223620

Gene position: 2731869-2730634 (Counterclockwise)

Preceding gene: 78223621

Following gene: 78223619

Centisome position: 68.34

GC content: 59.47

Gene sequence:

>1236_bases
ATGGCAGAAGAAAAGTTTTTCCTCGGCCGCCAGCCGATTCTTGATCGCGAGCAGAAGCTTTACGGTTTCGAACTCCTCTT
CCGTTCGGCCGATACCCTTCACGCCAATGTCACCGATTATCTCCAGGCCAGCGCCAGCGTCATCTTCGATGCCCTCTCCA
GTTTCGGCCTCCGCGAAATCCTCGGCAAGCACAAGGGGTTCATCAACGTCAATGCCGATGTCCTCATGAGCGAGGCCCTC
GAACTCCTTCCCCCGGAAAAAGTGGTCATCGAGCTTCTGGAGCACGTTCCCATAACCGAAACGGTCATAAACCGCTGCCG
CGAGCTGAAGGAGAAGGGGTTTTCGATCGCCCTTGACGACCATGTCTACGCGCCGGTCTACGAACCCCTCTACGAGATTG
TCGATGTCATCAAGGTTGATCTGATGCGTACCGGCATGGAGCGGTTGCAGTCCGAACTAGAGACGTTCAGGCACTGGAAG
CCGAAGCTTCTGGCCGAGAAGGTGGAGACCTACGAGCAGTACGAGCAGTGCGAGGCCCTCGGTTTCACCTACTTCCAGGG
GTACTACTTCGCCCGTCCCGTGGTGCTGACCCGTACCCGCGTCGACGTGGGGCGTCTCGCCATCATCAAGCTCTTCAACC
AGCTCGTGGCCGAGGTGGATATCGACGAGCTGGAAAGTACCTTCAAGCAGCACCCGAACCTGATCATCAACCTCCTCCGG
CTGGTGAACTCCGTCTCCGTGGGGCTCAAAAGCAGGATCACCAGCATGCGCCATGCGATCATGGTGCTCGGCTACCACCA
GCTGCGCCGCTGGGCCATGATGGCGCTTTTCGCCAACACCGCCCAGGCGGTGGGCGATAACCCGCTCCTCGTTATGGCCG
CAACCAGGGCCCGCCTCATGGAGCTCATCATCTCGGAGCAGCCCACCGTGCTCTATGACCGCGAATATCCCGACCGGGCC
TTCATGACCGGCATCCTTTCCCTTGCCGATGCGCTGCTCAAAATGCCCATCGAAGAGGTGGTGTCCCCCCTCAATCTGAA
CGAGGATGTCCGGCAGGCGCTCCTGGCCCGCGAGGGGGAGTTGGGCATCCTCCTCCAGCTGGTGGAAAAAATCGAGAGGG
ATGATTTCAGCGCGATTTCGCCCCTCATCGAACGCTTCAGCCTTTCCATGGCGAACCTTGCCCCTGTCCAGCTGGCAGCC
TGCAACTGGGTCAACGGCATGGACGACGCCGTCTGA

Upstream 100 bases:

>100_bases
TTTCGCCATCTCGCTACTTGCTATCTTGCCACTTGCTGCCGCCCGGTAGTATGCTGGTTCGTGAGTTGTCGTTGCATTCT
CTCCGCACGGAGTTTTTTTT

Downstream 100 bases:

>100_bases
TTGGGTCATTACCCCTCCATCCTTGACTTTCCGTCGGCATCCCTTCATACTGCCGGTTTGTTCATGGGGCAAGCCCCCGT
GAAGGTATCCGTTTTTTCGG

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MAEEKFFLGRQPILDREQKLYGFELLFRSADTLHANVTDYLQASASVIFDALSSFGLREILGKHKGFINVNADVLMSEAL
ELLPPEKVVIELLEHVPITETVINRCRELKEKGFSIALDDHVYAPVYEPLYEIVDVIKVDLMRTGMERLQSELETFRHWK
PKLLAEKVETYEQYEQCEALGFTYFQGYYFARPVVLTRTRVDVGRLAIIKLFNQLVAEVDIDELESTFKQHPNLIINLLR
LVNSVSVGLKSRITSMRHAIMVLGYHQLRRWAMMALFANTAQAVGDNPLLVMAATRARLMELIISEQPTVLYDREYPDRA
FMTGILSLADALLKMPIEEVVSPLNLNEDVRQALLAREGELGILLQLVEKIERDDFSAISPLIERFSLSMANLAPVQLAA
CNWVNGMDDAV

Sequences:

>Translated_411_residues
MAEEKFFLGRQPILDREQKLYGFELLFRSADTLHANVTDYLQASASVIFDALSSFGLREILGKHKGFINVNADVLMSEAL
ELLPPEKVVIELLEHVPITETVINRCRELKEKGFSIALDDHVYAPVYEPLYEIVDVIKVDLMRTGMERLQSELETFRHWK
PKLLAEKVETYEQYEQCEALGFTYFQGYYFARPVVLTRTRVDVGRLAIIKLFNQLVAEVDIDELESTFKQHPNLIINLLR
LVNSVSVGLKSRITSMRHAIMVLGYHQLRRWAMMALFANTAQAVGDNPLLVMAATRARLMELIISEQPTVLYDREYPDRA
FMTGILSLADALLKMPIEEVVSPLNLNEDVRQALLAREGELGILLQLVEKIERDDFSAISPLIERFSLSMANLAPVQLAA
CNWVNGMDDAV
>Mature_410_residues
AEEKFFLGRQPILDREQKLYGFELLFRSADTLHANVTDYLQASASVIFDALSSFGLREILGKHKGFINVNADVLMSEALE
LLPPEKVVIELLEHVPITETVINRCRELKEKGFSIALDDHVYAPVYEPLYEIVDVIKVDLMRTGMERLQSELETFRHWKP
KLLAEKVETYEQYEQCEALGFTYFQGYYFARPVVLTRTRVDVGRLAIIKLFNQLVAEVDIDELESTFKQHPNLIINLLRL
VNSVSVGLKSRITSMRHAIMVLGYHQLRRWAMMALFANTAQAVGDNPLLVMAATRARLMELIISEQPTVLYDREYPDRAF
MTGILSLADALLKMPIEEVVSPLNLNEDVRQALLAREGELGILLQLVEKIERDDFSAISPLIERFSLSMANLAPVQLAAC
NWVNGMDDAV

Specific function: Unknown

COG id: COG3434

COG function: function code T; Predicted signal transduction protein containing EAL and modified HD-GYP domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014408
- InterPro:   IPR001633
- InterPro:   IPR013976 [H]

Pfam domain/function: PF00563 EAL; PF08668 HDOD [H]

EC number: NA

Molecular weight: Translated: 46777; Mature: 46646

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEEKFFLGRQPILDREQKLYGFELLFRSADTLHANVTDYLQASASVIFDALSSFGLREI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHCCHHHH
LGKHKGFINVNADVLMSEALELLPPEKVVIELLEHVPITETVINRCRELKEKGFSIALDD
HHHCCCEEECCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECC
HVYAPVYEPLYEIVDVIKVDLMRTGMERLQSELETFRHWKPKLLAEKVETYEQYEQCEAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GFTYFQGYYFARPVVLTRTRVDVGRLAIIKLFNQLVAEVDIDELESTFKQHPNLIINLLR
HHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHH
LVNSVSVGLKSRITSMRHAIMVLGYHQLRRWAMMALFANTAQAVGDNPLLVMAATRARLM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHH
ELIISEQPTVLYDREYPDRAFMTGILSLADALLKMPIEEVVSPLNLNEDVRQALLAREGE
HHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHCCCC
LGILLQLVEKIERDDFSAISPLIERFSLSMANLAPVQLAACNWVNGMDDAV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AEEKFFLGRQPILDREQKLYGFELLFRSADTLHANVTDYLQASASVIFDALSSFGLREI
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHCCHHHH
LGKHKGFINVNADVLMSEALELLPPEKVVIELLEHVPITETVINRCRELKEKGFSIALDD
HHHCCCEEECCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECC
HVYAPVYEPLYEIVDVIKVDLMRTGMERLQSELETFRHWKPKLLAEKVETYEQYEQCEAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GFTYFQGYYFARPVVLTRTRVDVGRLAIIKLFNQLVAEVDIDELESTFKQHPNLIINLLR
HHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHH
LVNSVSVGLKSRITSMRHAIMVLGYHQLRRWAMMALFANTAQAVGDNPLLVMAATRARLM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHH
ELIISEQPTVLYDREYPDRAFMTGILSLADALLKMPIEEVVSPLNLNEDVRQALLAREGE
HHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHCCCC
LGILLQLVEKIERDDFSAISPLIERFSLSMANLAPVQLAACNWVNGMDDAV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2507523; 9274030; 9384377; 1943994 [H]