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The map label for this gene is 78223580

Identifier: 78223580

GI number: 78223580

Start: 2687129

End: 2687686

Strand: Reverse

Name: 78223580

Synonym: Gmet_2377

Alternate gene names: NA

Gene position: 2687686-2687129 (Counterclockwise)

Preceding gene: 78223581

Following gene: 78223579

Centisome position: 67.24

GC content: 64.34

Gene sequence:

>558_bases
ATGGTGAAACGGGGCGCTTCGATCGTGGCGGTACTGCTGACGGGGCTCTGCTACACTCCGACGAATGCGCATGTGGTATC
GGCTGCCGGCCGAGACTTCGCGTACACGTCGACCTCCGGGGGCAGAGTGACGCGGGTGTGGGACGGGGACACGGTCGTTA
TCACGCCTCCGTGGGGCAGATCCTTCACCTGCCGGCTGTACGGCATCGATGCTCCCGAAACTCCCGGGAAAGGTGTCCCG
GGCCAGCCCCACGGAGCAGCAGCGGCGGCAAAATTGCGTAAGCTTGTCCTCGGTCGCGACGTGGCGGTGAAGTTGACCGG
CGAGCGGAGCTATAAGCGCCAAATCGGCATCATCATGCTCGACGGGGTGGACGTGAATCAGGAGATGGTGCGCCGGGGCT
ATGCCTGGGCCTATGTCCGGTACCTGCGGCGCCCCTATGTATCGGACTACCTGGGGGCGGAGCAAAAGGCCCGTCAGGCG
CGCCGGGGATTGTGGCGAGACCGCAATCCAATGCCACCGTGGGAGTTTCGCCGAATGCTGCGGAAGTGGAGAAGGTGA

Upstream 100 bases:

>100_bases
TGGGTGCGGGTGCGGCATCTGACGTTCTTGAGGTGGATAAAATGAATAGAGGGGCCGGTCTCATGGCGAGGCCGGCCCTT
CTTGCTGGAGGGGAGAAGGC

Downstream 100 bases:

>100_bases
AAAAAAGAGGTTCTTCAGGGAATTCCGGGGAAGATTAATAAACAACAACGGCAGCACTGCGGTATCTTGATGGTTCCCCA
ACCAAAAAAGATCGCAGGAG

Product: SNase-like nuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MVKRGASIVAVLLTGLCYTPTNAHVVSAAGRDFAYTSTSGGRVTRVWDGDTVVITPPWGRSFTCRLYGIDAPETPGKGVP
GQPHGAAAAAKLRKLVLGRDVAVKLTGERSYKRQIGIIMLDGVDVNQEMVRRGYAWAYVRYLRRPYVSDYLGAEQKARQA
RRGLWRDRNPMPPWEFRRMLRKWRR

Sequences:

>Translated_185_residues
MVKRGASIVAVLLTGLCYTPTNAHVVSAAGRDFAYTSTSGGRVTRVWDGDTVVITPPWGRSFTCRLYGIDAPETPGKGVP
GQPHGAAAAAKLRKLVLGRDVAVKLTGERSYKRQIGIIMLDGVDVNQEMVRRGYAWAYVRYLRRPYVSDYLGAEQKARQA
RRGLWRDRNPMPPWEFRRMLRKWRR
>Mature_185_residues
MVKRGASIVAVLLTGLCYTPTNAHVVSAAGRDFAYTSTSGGRVTRVWDGDTVVITPPWGRSFTCRLYGIDAPETPGKGVP
GQPHGAAAAAKLRKLVLGRDVAVKLTGERSYKRQIGIIMLDGVDVNQEMVRRGYAWAYVRYLRRPYVSDYLGAEQKARQA
RRGLWRDRNPMPPWEFRRMLRKWRR

Specific function: Unknown

COG id: COG1525

COG function: function code L; Micrococcal nuclease (thermonuclease) homologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thermonuclease family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016071
- InterPro:   IPR006021
- InterPro:   IPR002071 [H]

Pfam domain/function: PF00565 SNase [H]

EC number: NA

Molecular weight: Translated: 20864; Mature: 20864

Theoretical pI: Translated: 11.30; Mature: 11.30

Prosite motif: PS01123 TNASE_1 ; PS50830 TNASE_3 ; PS01095 CHITINASE_18

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKRGASIVAVLLTGLCYTPTNAHVVSAAGRDFAYTSTSGGRVTRVWDGDTVVITPPWGR
CCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCEEEEEECCCEEEEECCCCC
SFTCRLYGIDAPETPGKGVPGQPHGAAAAAKLRKLVLGRDVAVKLTGERSYKRQIGIIML
CEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHEECEEEE
DGVDVNQEMVRRGYAWAYVRYLRRPYVSDYLGAEQKARQARRGLWRDRNPMPPWEFRRML
CCCCCCHHHHHCCHHHHHHHHHHCCHHHHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHHH
RKWRR
HHHCC
>Mature Secondary Structure
MVKRGASIVAVLLTGLCYTPTNAHVVSAAGRDFAYTSTSGGRVTRVWDGDTVVITPPWGR
CCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCEEEEEECCCEEEEECCCCC
SFTCRLYGIDAPETPGKGVPGQPHGAAAAAKLRKLVLGRDVAVKLTGERSYKRQIGIIML
CEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHEECEEEE
DGVDVNQEMVRRGYAWAYVRYLRRPYVSDYLGAEQKARQARRGLWRDRNPMPPWEFRRML
CCCCCCHHHHHCCHHHHHHHHHHCCHHHHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHHH
RKWRR
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]