| Definition | Geobacter metallireducens GS-15 chromosome, complete genome. |
|---|---|
| Accession | NC_007517 |
| Length | 3,997,420 |
Click here to switch to the map view.
The map label for this gene is yhjX [C]
Identifier: 78223456
GI number: 78223456
Start: 2547381
End: 2548706
Strand: Reverse
Name: yhjX [C]
Synonym: Gmet_2251
Alternate gene names: 78223456
Gene position: 2548706-2547381 (Counterclockwise)
Preceding gene: 78223457
Following gene: 78223455
Centisome position: 63.76
GC content: 49.7
Gene sequence:
>1326_bases ATGGCACAGCAAGCCACGAGGTTTTACGGATGGACGCTGGTCGGGATGTTTTTTGGAATTTATTTTCTGAATGCTACCTT TCCCTACGTTGGCGCAAGTGTAATTAACAGCTATATGGCTGAAAGTATTGGAATAACTAAAAGTATCGTTGGACTTGGAT TTTCCCTTTTTGTCCTCTCCTCGGCGCTTTCTGGGCCACTGGTGGCGTACTGCGTCAACAAAAAAGGTATTCGTTTTACC CTTGCCTCAGGCGGGCTGATCGTGGCTTTTGGGGCGTTGCTTATGGCGCTGACGGTATCGAAGGGATGGCAGTATGTTCT GACTTTTGGGGTTGTTATTGGTACAGGCGTTGGTTTGGGTACGGTTATCCCCATACAGACCGGTGTGACCAATTGGTTTG TCAGGCGAAGAGCTCTTGCCATGTCTATTGCGCTTTCGGCAGCCGGCTTCGGCTCGTTCATTGCAGCTCCACTTTTGAAT AAAATCATTGCCGCTTCCAACGGTAACTGGAAAAACGGCTGGTTGGTAGTTGTGGCCACCGGTTTGGCAGCTGCAACTAT AGCTGCTGGGGGGGTCAGAAACACTCCGGCTTCAATGGGACAGTTTCCTGATGGGGTGCCGCCGGGAAAAAGCTCTGAAA ACACTGCCCGCAATGCGCAGGTCCGCTCCTCGCGGATATATCAATCGAGCGAATTTTGGCCTGTCAGGGAAGTATTAAAA ACGAAAATATTCTGGTTGATCATTATTGCCTCTTTCAGTTTTCTTGCCGTCTTTAATACATGTGTCGCTCATGGTGTGAT TCATTTGCGCAGCCTTGGACATTCTCCGCAGTTTGCTGCCCTGTCCGCCGGTTTGTTACTGCTTTGCAGTGTAGGCGGCA AGTTGTTTGCCGGTATTTTAGGTGATCGTATAGAGCCGCGGTTTATCTTAAGTGCGGCTGTGTTTTCGACCCTGCTGGGA GCAGTTGCGCTTGCAAATGCCACTAATACTGCCGTGGTTTACCTTTACGCCTGCTGCGTTGGGGTCGGTTTTGGTGCAAG CTTCGTTGCCATGCCGACAATTTTGGCCAACTATTATGGCGTCAAATCTTTTGCCCCACTCATGGGAGTGGCCCTTCCCC TTACAAATGGGGGCAGTGCTATTGCACCACTTTTAGCCGGGATCGTCTACGATCGTTTCGGCAGCTATGTATTGGCCTTA TACGGAGGGGCGACTATCGCTCTTCTGGGAGCTATTCTAGTATTATTTGCCAAGCCTCCCGTATCGAATGCTGTGGTAAC TGTTGAAAGTAAGCTTGATGATAAAATCGGGGCGGATTTCTCCTAG
Upstream 100 bases:
>100_bases GAAAAGTTCAAAAATTCAAATTACGTGAAATTGGTGTGAAGGAATTCAATTTGCCTTCGACAAATTGAAAGTCTTATATC AGCTTTAAGCAGGAGGCGCA
Downstream 100 bases:
>100_bases TTGAGAGGGGTTTAATTTCTCAGCCAAAGAAATGCAACATCCTGCCAAATTGATCACTCCTGGCAAACGTGCACCAAATG ATCCGGTTCTTCTGGGGGGG
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Oxalate/Formate Antiporter; MFS Permease; MFS Family Transporter; Facilitator Family Transporter; Facilitator Superfamily Permease; Permeases Of Facilitator Superfamily
Number of amino acids: Translated: 441; Mature: 440
Protein sequence:
>441_residues MAQQATRFYGWTLVGMFFGIYFLNATFPYVGASVINSYMAESIGITKSIVGLGFSLFVLSSALSGPLVAYCVNKKGIRFT LASGGLIVAFGALLMALTVSKGWQYVLTFGVVIGTGVGLGTVIPIQTGVTNWFVRRRALAMSIALSAAGFGSFIAAPLLN KIIAASNGNWKNGWLVVVATGLAAATIAAGGVRNTPASMGQFPDGVPPGKSSENTARNAQVRSSRIYQSSEFWPVREVLK TKIFWLIIIASFSFLAVFNTCVAHGVIHLRSLGHSPQFAALSAGLLLLCSVGGKLFAGILGDRIEPRFILSAAVFSTLLG AVALANATNTAVVYLYACCVGVGFGASFVAMPTILANYYGVKSFAPLMGVALPLTNGGSAIAPLLAGIVYDRFGSYVLAL YGGATIALLGAILVLFAKPPVSNAVVTVESKLDDKIGADFS
Sequences:
>Translated_441_residues MAQQATRFYGWTLVGMFFGIYFLNATFPYVGASVINSYMAESIGITKSIVGLGFSLFVLSSALSGPLVAYCVNKKGIRFT LASGGLIVAFGALLMALTVSKGWQYVLTFGVVIGTGVGLGTVIPIQTGVTNWFVRRRALAMSIALSAAGFGSFIAAPLLN KIIAASNGNWKNGWLVVVATGLAAATIAAGGVRNTPASMGQFPDGVPPGKSSENTARNAQVRSSRIYQSSEFWPVREVLK TKIFWLIIIASFSFLAVFNTCVAHGVIHLRSLGHSPQFAALSAGLLLLCSVGGKLFAGILGDRIEPRFILSAAVFSTLLG AVALANATNTAVVYLYACCVGVGFGASFVAMPTILANYYGVKSFAPLMGVALPLTNGGSAIAPLLAGIVYDRFGSYVLAL YGGATIALLGAILVLFAKPPVSNAVVTVESKLDDKIGADFS >Mature_440_residues AQQATRFYGWTLVGMFFGIYFLNATFPYVGASVINSYMAESIGITKSIVGLGFSLFVLSSALSGPLVAYCVNKKGIRFTL ASGGLIVAFGALLMALTVSKGWQYVLTFGVVIGTGVGLGTVIPIQTGVTNWFVRRRALAMSIALSAAGFGSFIAAPLLNK IIAASNGNWKNGWLVVVATGLAAATIAAGGVRNTPASMGQFPDGVPPGKSSENTARNAQVRSSRIYQSSEFWPVREVLKT KIFWLIIIASFSFLAVFNTCVAHGVIHLRSLGHSPQFAALSAGLLLLCSVGGKLFAGILGDRIEPRFILSAAVFSTLLGA VALANATNTAVVYLYACCVGVGFGASFVAMPTILANYYGVKSFAPLMGVALPLTNGGSAIAPLLAGIVYDRFGSYVLALY GGATIALLGAILVLFAKPPVSNAVVTVESKLDDKIGADFS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45935; Mature: 45804
Theoretical pI: Translated: 10.16; Mature: 10.16
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQQATRFYGWTLVGMFFGIYFLNATFPYVGASVINSYMAESIGITKSIVGLGFSLFVLS CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH SALSGPLVAYCVNKKGIRFTLASGGLIVAFGALLMALTVSKGWQYVLTFGVVIGTGVGLG HHHCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC TVIPIQTGVTNWFVRRRALAMSIALSAAGFGSFIAAPLLNKIIAASNGNWKNGWLVVVAT EEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC GLAAATIAAGGVRNTPASMGQFPDGVPPGKSSENTARNAQVRSSRIYQSSEFWPVREVLK CHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH TKIFWLIIIASFSFLAVFNTCVAHGVIHLRSLGHSPQFAALSAGLLLLCSVGGKLFAGIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH GDRIEPRFILSAAVFSTLLGAVALANATNTAVVYLYACCVGVGFGASFVAMPTILANYYG CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC VKSFAPLMGVALPLTNGGSAIAPLLAGIVYDRFGSYVLALYGGATIALLGAILVLFAKPP HHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC VSNAVVTVESKLDDKIGADFS CCCEEEEEECHHCCCCCCCCC >Mature Secondary Structure AQQATRFYGWTLVGMFFGIYFLNATFPYVGASVINSYMAESIGITKSIVGLGFSLFVLS CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH SALSGPLVAYCVNKKGIRFTLASGGLIVAFGALLMALTVSKGWQYVLTFGVVIGTGVGLG HHHCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC TVIPIQTGVTNWFVRRRALAMSIALSAAGFGSFIAAPLLNKIIAASNGNWKNGWLVVVAT EEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC GLAAATIAAGGVRNTPASMGQFPDGVPPGKSSENTARNAQVRSSRIYQSSEFWPVREVLK CHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH TKIFWLIIIASFSFLAVFNTCVAHGVIHLRSLGHSPQFAALSAGLLLLCSVGGKLFAGIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH GDRIEPRFILSAAVFSTLLGAVALANATNTAVVYLYACCVGVGFGASFVAMPTILANYYG CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC VKSFAPLMGVALPLTNGGSAIAPLLAGIVYDRFGSYVLALYGGATIALLGAILVLFAKPP HHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC VSNAVVTVESKLDDKIGADFS CCCEEEEEECHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA