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The map label for this gene is ycdC [C]

Identifier: 78223446

GI number: 78223446

Start: 2534194

End: 2534790

Strand: Reverse

Name: ycdC [C]

Synonym: Gmet_2241

Alternate gene names: 78223446

Gene position: 2534790-2534194 (Counterclockwise)

Preceding gene: 78223447

Following gene: 78223444

Centisome position: 63.41

GC content: 36.35

Gene sequence:

>597_bases
ATGTCTGCAAAGAGACATTGTTCAGTTGATTTCCTCACGTACGAGAGTGAAAGGGATAATGGCAAAATTGAGTGCAGTAC
CTATGATAAATTAATAAAAACTGCGATTATGGTTATGAGCGAAGTTGGTTATAAAGGTATGTCAATAGGGATTCTTGCGG
ATATGGTAGGGATTTCAAAGAGCACAGTGATACACTATTTCAAGAGTAAGGAAGGTATCCTTCTAGCTGTAATGGAAAAC
TTTCTACCCGCGTATATTGATGAATTCAAACCAGTACTCAATAACAAAAGTCTTGATGGAGTTACAAAATTGAATAAGTT
TGTCCATTTTCATATGAAAATGGTGGCAGAAAGGAAGGATGTTCTGTCAATTAATATCAAAGATGGTAAATTTCTTACTG
GTAAAAGCAGGACTGTATATCAACAACAACAAAGGCTTTATGGACAACAGGTGGTTAGAATAATTCAACAGATACAGTCA
GAAGAAACAAACTTGTTCAAAGACCTTGATCCTCATGTTACAGCCAAGGCAATCATGGGGATGTGTAATCATGCGTGCGT
TTGGTACAAGAAAAATGATATTTTAACAGGCCGTTGA

Upstream 100 bases:

>100_bases
CCCCCCCAGCTAGGGGGGGCTTCTTGGTTTACTGATGCTTACGAAAAATATTATAACCTGCCGGGTTGTCCAAGACTCCC
TTCTATCACGGAGGTAATAA

Downstream 100 bases:

>100_bases
AAAACTCCTTCATTTCCAGGGCAATCCCCTTCAAGGAGATCATTTTAGGCCGATAGTTGCATTGATCTCGCCCTATTCGT
TCTTTGAAACTTTGCTTTTT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MSAKRHCSVDFLTYESERDNGKIECSTYDKLIKTAIMVMSEVGYKGMSIGILADMVGISKSTVIHYFKSKEGILLAVMEN
FLPAYIDEFKPVLNNKSLDGVTKLNKFVHFHMKMVAERKDVLSINIKDGKFLTGKSRTVYQQQQRLYGQQVVRIIQQIQS
EETNLFKDLDPHVTAKAIMGMCNHACVWYKKNDILTGR

Sequences:

>Translated_198_residues
MSAKRHCSVDFLTYESERDNGKIECSTYDKLIKTAIMVMSEVGYKGMSIGILADMVGISKSTVIHYFKSKEGILLAVMEN
FLPAYIDEFKPVLNNKSLDGVTKLNKFVHFHMKMVAERKDVLSINIKDGKFLTGKSRTVYQQQQRLYGQQVVRIIQQIQS
EETNLFKDLDPHVTAKAIMGMCNHACVWYKKNDILTGR
>Mature_197_residues
SAKRHCSVDFLTYESERDNGKIECSTYDKLIKTAIMVMSEVGYKGMSIGILADMVGISKSTVIHYFKSKEGILLAVMENF
LPAYIDEFKPVLNNKSLDGVTKLNKFVHFHMKMVAERKDVLSINIKDGKFLTGKSRTVYQQQQRLYGQQVVRIIQQIQSE
ETNLFKDLDPHVTAKAIMGMCNHACVWYKKNDILTGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22610; Mature: 22479

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAKRHCSVDFLTYESERDNGKIECSTYDKLIKTAIMVMSEVGYKGMSIGILADMVGISK
CCCCCCCCEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCH
STVIHYFKSKEGILLAVMENFLPAYIDEFKPVLNNKSLDGVTKLNKFVHFHMKMVAERKD
HHHHHEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
VLSINIKDGKFLTGKSRTVYQQQQRLYGQQVVRIIQQIQSEETNLFKDLDPHVTAKAIMG
EEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
MCNHACVWYKKNDILTGR
HHCCEEEEEECCCCCCCC
>Mature Secondary Structure 
SAKRHCSVDFLTYESERDNGKIECSTYDKLIKTAIMVMSEVGYKGMSIGILADMVGISK
CCCCCCCEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCH
STVIHYFKSKEGILLAVMENFLPAYIDEFKPVLNNKSLDGVTKLNKFVHFHMKMVAERKD
HHHHHEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
VLSINIKDGKFLTGKSRTVYQQQQRLYGQQVVRIIQQIQSEETNLFKDLDPHVTAKAIMG
EEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
MCNHACVWYKKNDILTGR
HHCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA