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The map label for this gene is tetD [H]

Identifier: 78223364

GI number: 78223364

Start: 2430648

End: 2431400

Strand: Reverse

Name: tetD [H]

Synonym: Gmet_2157

Alternate gene names: 78223364

Gene position: 2431400-2430648 (Counterclockwise)

Preceding gene: 78223365

Following gene: 78223363

Centisome position: 60.82

GC content: 55.64

Gene sequence:

>753_bases
ATGTCACTGGCCCAATCCATAGTTGTTGTTGCCGAACCGAGCCATTCCGATCTGTATGACTTGCTGGCAGTCGGCAATGC
GGGCATCCGGCTCGTATCCGCGGCGGGGCTTTCCACGGCAATTGGCCCCAGTGATCCGGATATCGTCATCCTCGACAGCG
GCACCGACGCCGATGGCGGGATAACCCTCCTTGGAGAAATCAAAGCACTTCGCAACGATCTGCCGGTAATCTTTCTGACC
GATTCCAGCTCCGAGGAGATCGTCCTCAAGGCATTCAGAAAAGGAGCCCGGGAGTATTTCCGCAAGCCGGTCGATCTGCA
TGTGCTCCAGCATGCGGTTGAAACCATACTCGCCCTTCGCCGGATGCAGCGGGAGCGCAGAGATCCCCTCAAGCGGCACT
ATTCCGATCCCATCAACCTTCCCGACGACCTTCCCGAATCGATCGGCCGTGCGGTCATGCACATCAAGAGCAATTACGAC
TGCGCCTTATATCTCGACGACCTGGCCCGCGCGGCCCACCTCAGTAAATTCCACTTCTGCCGCAACTTCAAAAAGTATAT
CGGCGTGAGCCCCATGCGGTTCATGAATATGGTAAAGATAAGCAAGGCGGAAACCCTTCTCCGGAGAGCGGATCTCACTA
TCTCGACCGTTGCCTACAAGCTCGGGTTCAATGATCCGAGTGAATTCACCCGACAGTTCAAGAGCATTACTGGCATATCC
CCATCTGCATTCAGACGCTCCTGCCTTAGTTGA

Upstream 100 bases:

>100_bases
CCACATCCTGCGCAAGCTGAACATGAAAAACAACGCGGAACTGACCCGCTTCGTCATCGAGAACAAGTTGATCTGATGGG
TTCATGGGAAAGGTCTGGCG

Downstream 100 bases:

>100_bases
ATCCACAACTAAATCCTATGCATAAAATTCTTTGATACCAAAAACAATCCAACTGTCTTTGTGTTGCAGATTTATTACAC
AAAAATAATTGCTTACTAGA

Product: two component AraC family transcriptional regulator

Products: NA

Alternate protein names: ORFR [H]

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSLAQSIVVVAEPSHSDLYDLLAVGNAGIRLVSAAGLSTAIGPSDPDIVILDSGTDADGGITLLGEIKALRNDLPVIFLT
DSSSEEIVLKAFRKGAREYFRKPVDLHVLQHAVETILALRRMQRERRDPLKRHYSDPINLPDDLPESIGRAVMHIKSNYD
CALYLDDLARAAHLSKFHFCRNFKKYIGVSPMRFMNMVKISKAETLLRRADLTISTVAYKLGFNDPSEFTRQFKSITGIS
PSAFRRSCLS

Sequences:

>Translated_250_residues
MSLAQSIVVVAEPSHSDLYDLLAVGNAGIRLVSAAGLSTAIGPSDPDIVILDSGTDADGGITLLGEIKALRNDLPVIFLT
DSSSEEIVLKAFRKGAREYFRKPVDLHVLQHAVETILALRRMQRERRDPLKRHYSDPINLPDDLPESIGRAVMHIKSNYD
CALYLDDLARAAHLSKFHFCRNFKKYIGVSPMRFMNMVKISKAETLLRRADLTISTVAYKLGFNDPSEFTRQFKSITGIS
PSAFRRSCLS
>Mature_249_residues
SLAQSIVVVAEPSHSDLYDLLAVGNAGIRLVSAAGLSTAIGPSDPDIVILDSGTDADGGITLLGEIKALRNDLPVIFLTD
SSSEEIVLKAFRKGAREYFRKPVDLHVLQHAVETILALRRMQRERRDPLKRHYSDPINLPDDLPESIGRAVMHIKSNYDC
ALYLDDLARAAHLSKFHFCRNFKKYIGVSPMRFMNMVKISKAETLLRRADLTISTVAYKLGFNDPSEFTRQFKSITGISP
SAFRRSCLS

Specific function: Repressor For The Chbbcarfg Operon (Probable). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 27792; Mature: 27661

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLAQSIVVVAEPSHSDLYDLLAVGNAGIRLVSAAGLSTAIGPSDPDIVILDSGTDADGG
CCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCC
ITLLGEIKALRNDLPVIFLTDSSSEEIVLKAFRKGAREYFRKPVDLHVLQHAVETILALR
EEHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
RMQRERRDPLKRHYSDPINLPDDLPESIGRAVMHIKSNYDCALYLDDLARAAHLSKFHFC
HHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHH
RNFKKYIGVSPMRFMNMVKISKAETLLRRADLTISTVAYKLGFNDPSEFTRQFKSITGIS
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHEEECCCCCHHHHHHHHHHHCCCC
PSAFRRSCLS
HHHHHHHHCC
>Mature Secondary Structure 
SLAQSIVVVAEPSHSDLYDLLAVGNAGIRLVSAAGLSTAIGPSDPDIVILDSGTDADGG
CCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCC
ITLLGEIKALRNDLPVIFLTDSSSEEIVLKAFRKGAREYFRKPVDLHVLQHAVETILALR
EEHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
RMQRERRDPLKRHYSDPINLPDDLPESIGRAVMHIKSNYDCALYLDDLARAAHLSKFHFC
HHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHH
RNFKKYIGVSPMRFMNMVKISKAETLLRRADLTISTVAYKLGFNDPSEFTRQFKSITGIS
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHEEECCCCCHHHHHHHHHHHCCCC
PSAFRRSCLS
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6094471; 6094472 [H]