Click here to switch to the map view.

The map label for this gene is ubiD [H]

Identifier: 78223309

GI number: 78223309

Start: 2367981

End: 2369525

Strand: Direct

Name: ubiD [H]

Synonym: Gmet_2102

Alternate gene names: 78223309

Gene position: 2367981-2369525 (Clockwise)

Preceding gene: 78223308

Following gene: 78223310

Centisome position: 59.24

GC content: 59.09

Gene sequence:

>1545_bases
ATGAGCACAACACAGCTTAAAGTGAAAGAGATCAACGAAGAACTCGACTCACGGCCCGCGGTACCCCCCATCAACGACAT
TCGCAGCTACATCGCAGCACTGGAAGCCCATGGGGTACTCCACCGCGTCAAGGCCGAAGTGGACTGGAAATTCGAACTTG
CCCACATCTCCAAGGTGAATGAAGAGCAAAAGGGCCCGGCATTGCTCTATGAGAACGTCAAGGGGAACACTATCCCGGTT
TTCACCAGCGCCTTCACCACCCCCGAACGTATCGCCATCTGCCTGGAACAGGACCCGTCCCTCTCCATGTGCCAGCTTTC
CCGGAAATGGATGGAGCTGACCACCAAGCAGATGATCAAGCCGACCTTTGTCAAGAACCCGCCGGTCATGGAAAACATCA
TTGAAGAAAAAGATGTGGACCTGGAAAACTTCCCCGCCCCCTGGTTCTATCCCGATGACGGCGGCCGCTTCTTCGGCACC
TCCGGGTACCTGGTGACCCAGGACCCGGATACGGGCTGGACAAACCTGGGCACCTATCGTTCCCAGATCCTGGGCAAGAA
CATCCTCGGCTCCCAGATCATCAGCGGCAAGCACGGCGACTTCCACATGAAAAAGTACCAGGAGCGGGGCGAGAAGATGC
CGGTCGCCTACGTGGTGGGGGGCGATCCCATACTGTTTTTGGCCTCCTCCACCCTGGTCAGCGCCCAGACCGATGAATAC
GACGTGGGGGGCGCCCTGCGCGGCCGTCCCATCGAAGTATTCAAGTCGGATCTTACCGGACTGACCCTGCCGGCCAACGC
CGAGATCATCGTCGAAGGGTGGATGGATCCCGAGGAGTTGATGGAAGAAGGGCCGTTCGGCGAGTACACCGGCTATTACT
CGGGCAACAAGATGAAGGACTATCCCAAGCCGGTCATCCGCGTGAAACGGATCATCCATCGCAACAAGCCGATCTTCTGG
TCAACCACGGTCGGCAAGCCGATCAACGACACCCACATGGTCCAGTCCATCAACCGTACGGCCACCCTGTGGCACGACTT
GGAGACCATGAAAGTGCCGGGCATCCAGAGCGTCTACTTCCCCGCTGCGGCCACCGGCCGTTTCTGGGTCGTCGCCTCGG
TCAAGCAGATGTATCCGGGTCACTCGAACCACGTGGCCGATGCCATCAACGGCAGCACCACCGGTCACTACGGCGTCAAG
GGGATCATCATCGTCGACCATGACATAGCCGCCGACGACATGGATCGTGTCTGGTGGGCGCTGGCCGTACGTTTCGATCC
GAAACGCTCAACCCAGATCATCACCCGCGGACGCTCTACCCCGCTCGACCCGGGCCTCCCCATCGAGGCGCGCGACGTGG
TCAGCCGCATCATCCTGGATGCCACCATACCATACGAGTGGAAAAACAAGCCGAACGAGATCTTCATGGATCGGACGGTG
CTGCAGAAGGTTTCCGACCGCTGGAATGAATACGGCTTCACCGGCGCAAGCCCGGTCGCCGAGATGATCCCGCGTCTCAC
CCGGCCGGAAGTGAAGAAAAAATAG

Upstream 100 bases:

>100_bases
ATGGACTACATCCTGGCCAGCATGCTGGAAGGGAAGCGGCTGAACTAACCCCTCGGAAGCCCACGGTTGCTTCACAAAAC
CCAACAGATAAGGAGGCAGT

Downstream 100 bases:

>100_bases
GACATCCAAGCACTCCCTCCCCCCTGCGGGGGAGGGGGGACTTCCCGATCCCAAAGGAGTAGACACCATGGCCCAGAAAA
AGGGAATCGTCATCATCTGC

Product: carboxylyase-like protein

Products: 2-octaprenylphenol; CO2 [C]

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 514; Mature: 513

Protein sequence:

>514_residues
MSTTQLKVKEINEELDSRPAVPPINDIRSYIAALEAHGVLHRVKAEVDWKFELAHISKVNEEQKGPALLYENVKGNTIPV
FTSAFTTPERIAICLEQDPSLSMCQLSRKWMELTTKQMIKPTFVKNPPVMENIIEEKDVDLENFPAPWFYPDDGGRFFGT
SGYLVTQDPDTGWTNLGTYRSQILGKNILGSQIISGKHGDFHMKKYQERGEKMPVAYVVGGDPILFLASSTLVSAQTDEY
DVGGALRGRPIEVFKSDLTGLTLPANAEIIVEGWMDPEELMEEGPFGEYTGYYSGNKMKDYPKPVIRVKRIIHRNKPIFW
STTVGKPINDTHMVQSINRTATLWHDLETMKVPGIQSVYFPAAATGRFWVVASVKQMYPGHSNHVADAINGSTTGHYGVK
GIIIVDHDIAADDMDRVWWALAVRFDPKRSTQIITRGRSTPLDPGLPIEARDVVSRIILDATIPYEWKNKPNEIFMDRTV
LQKVSDRWNEYGFTGASPVAEMIPRLTRPEVKKK

Sequences:

>Translated_514_residues
MSTTQLKVKEINEELDSRPAVPPINDIRSYIAALEAHGVLHRVKAEVDWKFELAHISKVNEEQKGPALLYENVKGNTIPV
FTSAFTTPERIAICLEQDPSLSMCQLSRKWMELTTKQMIKPTFVKNPPVMENIIEEKDVDLENFPAPWFYPDDGGRFFGT
SGYLVTQDPDTGWTNLGTYRSQILGKNILGSQIISGKHGDFHMKKYQERGEKMPVAYVVGGDPILFLASSTLVSAQTDEY
DVGGALRGRPIEVFKSDLTGLTLPANAEIIVEGWMDPEELMEEGPFGEYTGYYSGNKMKDYPKPVIRVKRIIHRNKPIFW
STTVGKPINDTHMVQSINRTATLWHDLETMKVPGIQSVYFPAAATGRFWVVASVKQMYPGHSNHVADAINGSTTGHYGVK
GIIIVDHDIAADDMDRVWWALAVRFDPKRSTQIITRGRSTPLDPGLPIEARDVVSRIILDATIPYEWKNKPNEIFMDRTV
LQKVSDRWNEYGFTGASPVAEMIPRLTRPEVKKK
>Mature_513_residues
STTQLKVKEINEELDSRPAVPPINDIRSYIAALEAHGVLHRVKAEVDWKFELAHISKVNEEQKGPALLYENVKGNTIPVF
TSAFTTPERIAICLEQDPSLSMCQLSRKWMELTTKQMIKPTFVKNPPVMENIIEEKDVDLENFPAPWFYPDDGGRFFGTS
GYLVTQDPDTGWTNLGTYRSQILGKNILGSQIISGKHGDFHMKKYQERGEKMPVAYVVGGDPILFLASSTLVSAQTDEYD
VGGALRGRPIEVFKSDLTGLTLPANAEIIVEGWMDPEELMEEGPFGEYTGYYSGNKMKDYPKPVIRVKRIIHRNKPIFWS
TTVGKPINDTHMVQSINRTATLWHDLETMKVPGIQSVYFPAAATGRFWVVASVKQMYPGHSNHVADAINGSTTGHYGVKG
IIIVDHDIAADDMDRVWWALAVRFDPKRSTQIITRGRSTPLDPGLPIEARDVVSRIILDATIPYEWKNKPNEIFMDRTVL
QKVSDRWNEYGFTGASPVAEMIPRLTRPEVKKK

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=460, Percent_Identity=30.2173913043478, Blast_Score=203, Evalue=2e-53,
Organism=Saccharomyces cerevisiae, GI6320748, Length=502, Percent_Identity=24.1035856573705, Blast_Score=136, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: NA

Molecular weight: Translated: 57896; Mature: 57765

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTQLKVKEINEELDSRPAVPPINDIRSYIAALEAHGVLHRVKAEVDWKFELAHISKVN
CCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHCC
EEQKGPALLYENVKGNTIPVFTSAFTTPERIAICLEQDPSLSMCQLSRKWMELTTKQMIK
CCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
PTFVKNPPVMENIIEEKDVDLENFPAPWFYPDDGGRFFGTSGYLVTQDPDTGWTNLGTYR
CCCCCCCCHHHHHHHHCCCCHHCCCCCCEECCCCCCEEECCCEEEECCCCCCCCCHHHHH
SQILGKNILGSQIISGKHGDFHMKKYQERGEKMPVAYVVGGDPILFLASSTLVSAQTDEY
HHHHCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEECCCEEEEEECCEEEECCCCCC
DVGGALRGRPIEVFKSDLTGLTLPANAEIIVEGWMDPEELMEEGPFGEYTGYYSGNKMKD
CCCCCCCCCHHHHHHHCCCCEECCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCC
YPKPVIRVKRIIHRNKPIFWSTTVGKPINDTHMVQSINRTATLWHDLETMKVPGIQSVYF
CCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEC
PAAATGRFWVVASVKQMYPGHSNHVADAINGSTTGHYGVKGIIIVDHDIAADDMDRVWWA
CCCCCCCEEEEEEHHHHCCCCCCCHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHHEEEE
LAVRFDPKRSTQIITRGRSTPLDPGLPIEARDVVSRIILDATIPYEWKNKPNEIFMDRTV
EEEEECCCCCCHHEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHH
LQKVSDRWNEYGFTGASPVAEMIPRLTRPEVKKK
HHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
STTQLKVKEINEELDSRPAVPPINDIRSYIAALEAHGVLHRVKAEVDWKFELAHISKVN
CCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHCC
EEQKGPALLYENVKGNTIPVFTSAFTTPERIAICLEQDPSLSMCQLSRKWMELTTKQMIK
CCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
PTFVKNPPVMENIIEEKDVDLENFPAPWFYPDDGGRFFGTSGYLVTQDPDTGWTNLGTYR
CCCCCCCCHHHHHHHHCCCCHHCCCCCCEECCCCCCEEECCCEEEECCCCCCCCCHHHHH
SQILGKNILGSQIISGKHGDFHMKKYQERGEKMPVAYVVGGDPILFLASSTLVSAQTDEY
HHHHCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEECCCEEEEEECCEEEECCCCCC
DVGGALRGRPIEVFKSDLTGLTLPANAEIIVEGWMDPEELMEEGPFGEYTGYYSGNKMKD
CCCCCCCCCHHHHHHHCCCCEECCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCC
YPKPVIRVKRIIHRNKPIFWSTTVGKPINDTHMVQSINRTATLWHDLETMKVPGIQSVYF
CCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEC
PAAATGRFWVVASVKQMYPGHSNHVADAINGSTTGHYGVKGIIIVDHDIAADDMDRVWWA
CCCCCCCEEEEEEHHHHCCCCCCCHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHHEEEE
LAVRFDPKRSTQIITRGRSTPLDPGLPIEARDVVSRIILDATIPYEWKNKPNEIFMDRTV
EEEEECCCCCCHHEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHH
LQKVSDRWNEYGFTGASPVAEMIPRLTRPEVKKK
HHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 3-octaprenyl-4-hydroxybenzoate [C]

Specific reaction: 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA