| Definition | Geobacter metallireducens GS-15 chromosome, complete genome. |
|---|---|
| Accession | NC_007517 |
| Length | 3,997,420 |
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The map label for this gene is menB [H]
Identifier: 78223295
GI number: 78223295
Start: 2349629
End: 2350774
Strand: Reverse
Name: menB [H]
Synonym: Gmet_2088
Alternate gene names: 78223295
Gene position: 2350774-2349629 (Counterclockwise)
Preceding gene: 78223300
Following gene: 78223294
Centisome position: 58.81
GC content: 62.04
Gene sequence:
>1146_bases ATGGCGAGAACAGACGAGATAATCGCAAGAACCGCACCGGGGCACCTGAACGACCACAATTTGATCGACCGTGAGGTTGA GAGCCTCTGCGACGGCATGGTGAAGTACGAGAAGCGGCCGGCAAAGCGTCATGACGGCAGTGTGGCAGAGGGGATTTACA ACGCCTGGATCATCCTGGACAACCCCAAGCAGTACAACTCCTACACCACTGACATGGTCAAGGCAATCATCCTCGCCTTC CGGCGGGCCTCGGTCGACCGCTCCGTGAATGCCGTGGTCTTCACCGGTGTTGGCGACAAGGCGTTCTGCACCGGCGGCAA TACCAAGGAATACGCAGAGTACTATGCCGGTAACCCCCAAGAGTATCGCCAGTACATGCGGCTGTTCAACGACATGGTCT CCGCCATCCTCGGCTGCGACAAGGCGGTGATCAGCCGGGTGAACGGGATGCGGATCGGCGGCGGCCAGGAAATCGGCATG GCCTGCGACTTCTCCATCGCCCAGGACCTGGCCAACTTCGGTCAGGCCGGTCCCAAGCATGGCTCTGCCGCCATCGGCGG GGCGACCGATTTCCTGCCGCTGATGGTCGGCTGCGAGCAGGCCATGGTGTCCGGTACGCTGTGCGAGCCGTTCTCGGCCC ACAAGGCCGCCCGCCTGGGGATCATCTGTGACGTGGTGCCGGCCCTCAAGGTGGGTGGCAAATTCGTCGCCAACCCGACC GTGGTCACCGACCGTTATCTGGACGAGTACGGCCGGGTCGTTCATGGCGAGTTCAAGGCCGGCGCCGCCTTCAAGGAAGG GCAGGGGCAGATCAAGGAAGGGGAGATTGATCTCAGTCTGCTGGACGAGAAGGTTGAGTCGCTCTGCACGAAGCTGCTGG AGACCTTCCCGGAGTGCATGACCAAGAGCCTGGAGGAGCTGCGCAAGCCGAAGCTCCATGCATGGAACCTCAACAAGGAA AACTCCCGCGCCTGGCTGGCCCTCAACATGATGAATGAGGCCCGCACCGGCTTCCGGGCCTTCAACGAGGGGACCAAGGA GACCGGCCGCGAGATCGACTTTGTGAAGTTGCGCCAGGGTCTGGCCAAGGGGACGCCCTGGACCGAGGAGCTGATCGAGA GCCTCATGCCGACGGCGCAGAAGTAA
Upstream 100 bases:
>100_bases GTAAATCGGTAATGAAGTACTAATTTACATAAATAGAGCATGAAACGTTGTTTTGAATAGTAGGGCTTGTACGAAAATAT CCAACGGGGGAGGAAAAGCA
Downstream 100 bases:
>100_bases CGGCAGCGCGCCCGGTGCCCTTACTCCGGTGGGGCACCGGGCGTAGGCAGCTGTAAATAGCGTTTAAAAAATGCTAATCA AATAACGTTTGACAGTAAAA
Product: enoyl-CoA hydratase/isomerase
Products: NA
Alternate protein names: DHNA-CoA synthase [H]
Number of amino acids: Translated: 381; Mature: 380
Protein sequence:
>381_residues MARTDEIIARTAPGHLNDHNLIDREVESLCDGMVKYEKRPAKRHDGSVAEGIYNAWIILDNPKQYNSYTTDMVKAIILAF RRASVDRSVNAVVFTGVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKAVISRVNGMRIGGGQEIGM ACDFSIAQDLANFGQAGPKHGSAAIGGATDFLPLMVGCEQAMVSGTLCEPFSAHKAARLGIICDVVPALKVGGKFVANPT VVTDRYLDEYGRVVHGEFKAGAAFKEGQGQIKEGEIDLSLLDEKVESLCTKLLETFPECMTKSLEELRKPKLHAWNLNKE NSRAWLALNMMNEARTGFRAFNEGTKETGREIDFVKLRQGLAKGTPWTEELIESLMPTAQK
Sequences:
>Translated_381_residues MARTDEIIARTAPGHLNDHNLIDREVESLCDGMVKYEKRPAKRHDGSVAEGIYNAWIILDNPKQYNSYTTDMVKAIILAF RRASVDRSVNAVVFTGVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKAVISRVNGMRIGGGQEIGM ACDFSIAQDLANFGQAGPKHGSAAIGGATDFLPLMVGCEQAMVSGTLCEPFSAHKAARLGIICDVVPALKVGGKFVANPT VVTDRYLDEYGRVVHGEFKAGAAFKEGQGQIKEGEIDLSLLDEKVESLCTKLLETFPECMTKSLEELRKPKLHAWNLNKE NSRAWLALNMMNEARTGFRAFNEGTKETGREIDFVKLRQGLAKGTPWTEELIESLMPTAQK >Mature_380_residues ARTDEIIARTAPGHLNDHNLIDREVESLCDGMVKYEKRPAKRHDGSVAEGIYNAWIILDNPKQYNSYTTDMVKAIILAFR RASVDRSVNAVVFTGVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKAVISRVNGMRIGGGQEIGMA CDFSIAQDLANFGQAGPKHGSAAIGGATDFLPLMVGCEQAMVSGTLCEPFSAHKAARLGIICDVVPALKVGGKFVANPTV VTDRYLDEYGRVVHGEFKAGAAFKEGQGQIKEGEIDLSLLDEKVESLCTKLLETFPECMTKSLEELRKPKLHAWNLNKEN SRAWLALNMMNEARTGFRAFNEGTKETGREIDFVKLRQGLAKGTPWTEELIESLMPTAQK
Specific function: Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA) (Probable) [H]
COG id: COG0447
COG function: function code H; Dihydroxynaphthoic acid synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI194097323, Length=194, Percent_Identity=29.3814432989691, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1788597, Length=173, Percent_Identity=34.6820809248555, Blast_Score=104, Evalue=9e-24, Organism=Caenorhabditis elegans, GI17554946, Length=241, Percent_Identity=28.2157676348548, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17535521, Length=215, Percent_Identity=24.6511627906977, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17549921, Length=191, Percent_Identity=27.7486910994764, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI20129971, Length=189, Percent_Identity=33.3333333333333, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI24653477, Length=189, Percent_Identity=33.3333333333333, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI24654903, Length=170, Percent_Identity=29.4117647058824, Blast_Score=70, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001753 - InterPro: IPR010198 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.1.3.36 [H]
Molecular weight: Translated: 41952; Mature: 41821
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: PS00166 ENOYL_COA_HYDRATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARTDEIIARTAPGHLNDHNLIDREVESLCDGMVKYEKRPAKRHDGSVAEGIYNAWIILD CCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHEEEEEEE NPKQYNSYTTDMVKAIILAFRRASVDRSVNAVVFTGVGDKAFCTGGNTKEYAEYYAGNPQ CCHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEECCCCHHHHHHHHCCCHH EYRQYMRLFNDMVSAILGCDKAVISRVNGMRIGGGQEIGMACDFSIAQDLANFGQAGPKH HHHHHHHHHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCEECHHHHHHHHHHCCCCCCC GSAAIGGATDFLPLMVGCEQAMVSGTLCEPFSAHKAARLGIICDVVPALKVGGKFVANPT CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCC VVTDRYLDEYGRVVHGEFKAGAAFKEGQGQIKEGEIDLSLLDEKVESLCTKLLETFPECM HHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TKSLEELRKPKLHAWNLNKENSRAWLALNMMNEARTGFRAFNEGTKETGREIDFVKLRQG HHHHHHHHCCCCEEECCCCCCCCEEEEEEHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHH LAKGTPWTEELIESLMPTAQK HHCCCCHHHHHHHHHCCCCCC >Mature Secondary Structure ARTDEIIARTAPGHLNDHNLIDREVESLCDGMVKYEKRPAKRHDGSVAEGIYNAWIILD CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHEEEEEEE NPKQYNSYTTDMVKAIILAFRRASVDRSVNAVVFTGVGDKAFCTGGNTKEYAEYYAGNPQ CCHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEECCCCHHHHHHHHCCCHH EYRQYMRLFNDMVSAILGCDKAVISRVNGMRIGGGQEIGMACDFSIAQDLANFGQAGPKH HHHHHHHHHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCEECHHHHHHHHHHCCCCCCC GSAAIGGATDFLPLMVGCEQAMVSGTLCEPFSAHKAARLGIICDVVPALKVGGKFVANPT CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCC VVTDRYLDEYGRVVHGEFKAGAAFKEGQGQIKEGEIDLSLLDEKVESLCTKLLETFPECM HHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TKSLEELRKPKLHAWNLNKENSRAWLALNMMNEARTGFRAFNEGTKETGREIDFVKLRQG HHHHHHHHCCCCEEECCCCCCCCEEEEEEHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHH LAKGTPWTEELIESLMPTAQK HHCCCCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA