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The map label for this gene is ybfF [C]

Identifier: 78223077

GI number: 78223077

Start: 2083063

End: 2083803

Strand: Reverse

Name: ybfF [C]

Synonym: Gmet_1870

Alternate gene names: 78223077

Gene position: 2083803-2083063 (Counterclockwise)

Preceding gene: 78223078

Following gene: 78223076

Centisome position: 52.13

GC content: 51.69

Gene sequence:

>741_bases
GTGAAGGTATATGTCGTCGTACCAACCTATAACGAGAGTGACAATATCGTTGCACTTATGGAGAAGATACTGGCTCAGCG
TGACAACATACATGTCCTGGTGGTGGATGATAATTCTCCGGACGGCACGGGAGAAATCGCTGCCCGGATGAGTAGTGACA
ATCCACGTATCCACGTGCTCCGCCGTTCTGGTAAAATGGGGCTTGGCTCAGCCTATTGTGACGGATTCAGAGTGGCTTTG
AGGGATGGGGCCGATTTCATCATCGAAATGGATGCCGACTTTTCCCACGACCCGGCAACTATTCCAGCGCTCCTTGCCGC
TACGGACAAGTATGACGTTGTGGTTGGATCTCGCTATCTGAACGGCGTAAGTGTTGTCAATTGGCCCATCAGACGACTGA
TGCTCAGCTACTTCGCAAGTGTCTACACACGATTCGTAACCGGGCTTGCGCTTCGAGACTGCACCAGCGGCTTCAAGTGC
TTCCGACGTCGAGTTATTGAATCCGTCGACTTGGATACGATACGGTCCGACGGATACTCATTCCAGATTGAGATGAACTA
CCGTTGCGTCGAGCGAGGTTTCCGTGTCGGCGAGATTCCGATTATCTTCATTGACCGTCATGCGGGAAGTTCCAAAATGT
CGAAGAAGATTGTCCGGGAAGCCGTCTTGATGGTCTGGAAGTTAAAGCTAGGTTCATTGGTCAAAAAGCTGACTCGCAGG
GGGGACCGCCATGCTGCATGA

Upstream 100 bases:

>100_bases
TGCAAACAAAATTTATTTGTATGGGCGTCCGGTTTGCTAGCGGCGGCAGCATGGGAATAACGTATCTGAACCAGCGTATT
TTGTGGAGGGAGAAAATCAG

Downstream 100 bases:

>100_bases
TGGCTGGGCAGTTATCTGTCAGGTTGGTTTGTGGGGATGGATAGCCTCGACTATGGTTCTTATTGTTAAGGCATTCCCAA
AACGCGGGACAATGAACGGT

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MKVYVVVPTYNESDNIVALMEKILAQRDNIHVLVVDDNSPDGTGEIAARMSSDNPRIHVLRRSGKMGLGSAYCDGFRVAL
RDGADFIIEMDADFSHDPATIPALLAATDKYDVVVGSRYLNGVSVVNWPIRRLMLSYFASVYTRFVTGLALRDCTSGFKC
FRRRVIESVDLDTIRSDGYSFQIEMNYRCVERGFRVGEIPIIFIDRHAGSSKMSKKIVREAVLMVWKLKLGSLVKKLTRR
GDRHAA

Sequences:

>Translated_246_residues
MKVYVVVPTYNESDNIVALMEKILAQRDNIHVLVVDDNSPDGTGEIAARMSSDNPRIHVLRRSGKMGLGSAYCDGFRVAL
RDGADFIIEMDADFSHDPATIPALLAATDKYDVVVGSRYLNGVSVVNWPIRRLMLSYFASVYTRFVTGLALRDCTSGFKC
FRRRVIESVDLDTIRSDGYSFQIEMNYRCVERGFRVGEIPIIFIDRHAGSSKMSKKIVREAVLMVWKLKLGSLVKKLTRR
GDRHAA
>Mature_246_residues
MKVYVVVPTYNESDNIVALMEKILAQRDNIHVLVVDDNSPDGTGEIAARMSSDNPRIHVLRRSGKMGLGSAYCDGFRVAL
RDGADFIIEMDADFSHDPATIPALLAATDKYDVVVGSRYLNGVSVVNWPIRRLMLSYFASVYTRFVTGLALRDCTSGFKC
FRRRVIESVDLDTIRSDGYSFQIEMNYRCVERGFRVGEIPIIFIDRHAGSSKMSKKIVREAVLMVWKLKLGSLVKKLTRR
GDRHAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4503363, Length=220, Percent_Identity=35.4545454545455, Blast_Score=134, Evalue=6e-32,
Organism=Caenorhabditis elegans, GI71999402, Length=228, Percent_Identity=38.1578947368421, Blast_Score=155, Evalue=2e-38,
Organism=Saccharomyces cerevisiae, GI6325441, Length=248, Percent_Identity=29.4354838709677, Blast_Score=103, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24585265, Length=221, Percent_Identity=35.2941176470588, Blast_Score=129, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 27674; Mature: 27674

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVYVVVPTYNESDNIVALMEKILAQRDNIHVLVVDDNSPDGTGEIAARMSSDNPRIHVL
CEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEE
RRSGKMGLGSAYCDGFRVALRDGADFIIEMDADFSHDPATIPALLAATDKYDVVVGSRYL
EECCCCCCCHHHCCCEEEEEECCCEEEEEECCCCCCCCCHHHHHHHCCCCCEEEECCHHH
NGVSVVNWPIRRLMLSYFASVYTRFVTGLALRDCTSGFKCFRRRVIESVDLDTIRSDGYS
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEE
FQIEMNYRCVERGFRVGEIPIIFIDRHAGSSKMSKKIVREAVLMVWKLKLGSLVKKLTRR
EEEEECHHHHHCCCEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GDRHAA
CCCCCC
>Mature Secondary Structure
MKVYVVVPTYNESDNIVALMEKILAQRDNIHVLVVDDNSPDGTGEIAARMSSDNPRIHVL
CEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEE
RRSGKMGLGSAYCDGFRVALRDGADFIIEMDADFSHDPATIPALLAATDKYDVVVGSRYL
EECCCCCCCHHHCCCEEEEEECCCEEEEEECCCCCCCCCHHHHHHHCCCCCEEEECCHHH
NGVSVVNWPIRRLMLSYFASVYTRFVTGLALRDCTSGFKCFRRRVIESVDLDTIRSDGYS
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEE
FQIEMNYRCVERGFRVGEIPIIFIDRHAGSSKMSKKIVREAVLMVWKLKLGSLVKKLTRR
EEEEECHHHHHCCCEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GDRHAA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]