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The map label for this gene is yfdE [H]

Identifier: 78222920

GI number: 78222920

Start: 1923273

End: 1924118

Strand: Reverse

Name: yfdE [H]

Synonym: Gmet_1711

Alternate gene names: 78222920

Gene position: 1924118-1923273 (Counterclockwise)

Preceding gene: 78222921

Following gene: 78222919

Centisome position: 48.13

GC content: 65.37

Gene sequence:

>846_bases
ATGAAGCCCCTTAAAGGAATGGTTGTCGTGAACCTGGCCGTGAATCTTCCCGGCCCCGCCGCCGCCCGGCGCCTCCGGCA
TCTGGGGGCATCCGTCGTGAAGGTGGAGCCGCCGTCAGGCGACCTCATGGAACTGTACAACGCTGATTGGTACCGGGATA
TGGCCGTCGGCCAGACGGTCGTCAGGATCGACCTAAAGAGCGCCGAAGGTCTGGCTCACCTCAACGGCCTGCTGGCAACC
GCCGACCTCCTCATTACCGCCAGCCGCCCCGCCGGCCTCTGCCGTCTCGGTCTCGGGTGGGAGGAGCTTCACCGGAAATT
CCCCCGCCTCTGCCAAGTGGCCATCGTCGGCTATCCCGCCCCCCGCGAAAACGAGGCGGGCCACGACCTCACCTACCAGG
CCTCTCTCGGTCTTCTCAACCCTCCCCACATGCCCCGGACCCTCCTTGCCGACATGGCCGGCGCCGAGCAGACCGTTTCG
GCCGCCATGGCACTCCTTCTCATCCGCGAACGGGGACAGGAGGCGGGCTATGCGGAGGTCGCCCTTTCCCGCGCGGCCGA
AGCCATGGCCGAGCCTCTACGCTACGGCAGTACCGCTCCGGGCGCTCTTCTGGGTGGCGGCATTCCCGAATACAACCTCT
ATGAAGCCCGTGACGGCTGGGTGGCCCTGGCAGCTCTGGAGCCCCACTTCAAGAGCCGGCTCGAAGAGTCGCTGGGAGTG
AGTACCAGAGAAGAGTACCGCGCCGCCTTTGCCGACCGGAGCGCCCGGGAGTGGCAGGAATGGGGACGGGAGCAGGATAT
TCCGATTATCGTCGCAGAGGAGAAGAAACCATGTATCTCGAACTGA

Upstream 100 bases:

>100_bases
TCGGGGAAGTTGCCGATGTCCTCGTGGTGGCCGACGTGATGCAATTCGTGCCGGCTCTCACGGCCAAACTGCAGTGAACC
GGGCTGACAGAGGAGGAGCC

Downstream 100 bases:

>100_bases
CCGAAGAACAGAAACTGATTCAGGACACCGCCCGTGACTTTGCCAAGGCCGAACTGGAGCCGGTGGCGGCGCAGCTTGAC
CAGGGAAGCGACCGCGGCCC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MKPLKGMVVVNLAVNLPGPAAARRLRHLGASVVKVEPPSGDLMELYNADWYRDMAVGQTVVRIDLKSAEGLAHLNGLLAT
ADLLITASRPAGLCRLGLGWEELHRKFPRLCQVAIVGYPAPRENEAGHDLTYQASLGLLNPPHMPRTLLADMAGAEQTVS
AAMALLLIRERGQEAGYAEVALSRAAEAMAEPLRYGSTAPGALLGGGIPEYNLYEARDGWVALAALEPHFKSRLEESLGV
STREEYRAAFADRSAREWQEWGREQDIPIIVAEEKKPCISN

Sequences:

>Translated_281_residues
MKPLKGMVVVNLAVNLPGPAAARRLRHLGASVVKVEPPSGDLMELYNADWYRDMAVGQTVVRIDLKSAEGLAHLNGLLAT
ADLLITASRPAGLCRLGLGWEELHRKFPRLCQVAIVGYPAPRENEAGHDLTYQASLGLLNPPHMPRTLLADMAGAEQTVS
AAMALLLIRERGQEAGYAEVALSRAAEAMAEPLRYGSTAPGALLGGGIPEYNLYEARDGWVALAALEPHFKSRLEESLGV
STREEYRAAFADRSAREWQEWGREQDIPIIVAEEKKPCISN
>Mature_281_residues
MKPLKGMVVVNLAVNLPGPAAARRLRHLGASVVKVEPPSGDLMELYNADWYRDMAVGQTVVRIDLKSAEGLAHLNGLLAT
ADLLITASRPAGLCRLGLGWEELHRKFPRLCQVAIVGYPAPRENEAGHDLTYQASLGLLNPPHMPRTLLADMAGAEQTVS
AAMALLLIRERGQEAGYAEVALSRAAEAMAEPLRYGSTAPGALLGGGIPEYNLYEARDGWVALAALEPHFKSRLEESLGV
STREEYRAAFADRSAREWQEWGREQDIPIIVAEEKKPCISN

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI266456254, Length=309, Percent_Identity=28.1553398058252, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI42794625, Length=309, Percent_Identity=28.1553398058252, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI266458393, Length=256, Percent_Identity=30.078125, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI300863128, Length=254, Percent_Identity=24.4094488188976, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI266458397, Length=247, Percent_Identity=29.9595141700405, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI300863124, Length=254, Percent_Identity=24.4094488188976, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI300863126, Length=150, Percent_Identity=28.6666666666667, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87082093, Length=205, Percent_Identity=28.2926829268293, Blast_Score=83, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=297, Percent_Identity=25.2525252525253, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=299, Percent_Identity=25.0836120401338, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24585488, Length=295, Percent_Identity=26.7796610169492, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 30554; Mature: 30554

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLKGMVVVNLAVNLPGPAAARRLRHLGASVVKVEPPSGDLMELYNADWYRDMAVGQTV
CCCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCHHHHHHHCCEE
VRIDLKSAEGLAHLNGLLATADLLITASRPAGLCRLGLGWEELHRKFPRLCQVAIVGYPA
EEEECCCCCCHHHHHHHHHHHHEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHEECCCC
PRENEAGHDLTYQASLGLLNPPHMPRTLLADMAGAEQTVSAAMALLLIRERGQEAGYAEV
CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHH
ALSRAAEAMAEPLRYGSTAPGALLGGGIPEYNLYEARDGWVALAALEPHFKSRLEESLGV
HHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEEECCCCEEEEEEECHHHHHHHHHHHCC
STREEYRAAFADRSAREWQEWGREQDIPIIVAEEKKPCISN
CCHHHHHHHHHCCCHHHHHHCCCCCCCCEEEECCCCCCCCC
>Mature Secondary Structure
MKPLKGMVVVNLAVNLPGPAAARRLRHLGASVVKVEPPSGDLMELYNADWYRDMAVGQTV
CCCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCHHHHHHHCCEE
VRIDLKSAEGLAHLNGLLATADLLITASRPAGLCRLGLGWEELHRKFPRLCQVAIVGYPA
EEEECCCCCCHHHHHHHHHHHHEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHEECCCC
PRENEAGHDLTYQASLGLLNPPHMPRTLLADMAGAEQTVSAAMALLLIRERGQEAGYAEV
CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHH
ALSRAAEAMAEPLRYGSTAPGALLGGGIPEYNLYEARDGWVALAALEPHFKSRLEESLGV
HHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEEECCCCEEEEEEECHHHHHHHHHHHCC
STREEYRAAFADRSAREWQEWGREQDIPIIVAEEKKPCISN
CCHHHHHHHHHCCCHHHHHHCCCCCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]