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The map label for this gene is yciR [C]

Identifier: 78222915

GI number: 78222915

Start: 1915319

End: 1916293

Strand: Direct

Name: yciR [C]

Synonym: Gmet_1706

Alternate gene names: 78222915

Gene position: 1915319-1916293 (Clockwise)

Preceding gene: 78222912

Following gene: 78222916

Centisome position: 47.91

GC content: 58.46

Gene sequence:

>975_bases
ATGAAAATCCTCTATATTGACGACAAAGCGGAAATCCGCACGCTATTGGGACGCTACCTTAAGTCATGGGGGTATGACGC
CCTCGGTGCGCCCAATGGCGAGTCCGGGTGGAATCTTATCCAGGAGCATCGCCCCAGCATTGTGATCACCGACTGGATCA
TGCCCGACCTGGAGGGCCCGGCCCTCTGCCGGCGCATCAGGGGAGCCGGGTTTCCGGAATACACCTACATCATCATGCTG
ACCGCCAGGAGAGATGATGTGGTGGTCGGCATGGAGGCCGGGGCCGACGATTTCATCGGGAAGCCTTTCAATAAGGAAGA
GCTCAAGGTGCGCATCAAGGCGGCCGAGAGGATCGTGACCCTGGAGCGGGAACTGGCGCTCACCAACCTGGGGCTTCAGG
AAAAGAACCGCCGGCTGGAGGAGTCGGAAGAACAGCTCCGGCAGATGGCCCATTTTGACAAACTGACTGGGCTGCCGAAC
CGCCTGCTGTTTTTTGAGCGCCTGGAGCGTGCCGTTGTGGAATCCAAACGAAGCGAGAGCAATTTCGGGCTCCTGTTTGT
GGACCTTGACGCGTTCAAGGCGGTAAATGACAACCATGGCCACAAGACCGGGGACGAACTTTTGGTCATGGCGGGGCAGC
GCATGGACGGCTGTGTCAGGGCATCCGACACCGTGGCCCGCATGGGGGGTGACGAATTTTGCATTATCGTACGCGGGGTG
AAGTCTTTTGACGGTCCGGTGACCGTGGCCGAGAAGATCATTTCAGCCCTGTCACGCCCCTTCGATATTTCCGGCATCAC
CTGCCGGATCGGGGCTTCGGTGGGGATCAGCGTCTATCCCCATGACGGAGATTCCGTGGAACTTCTCATGACCCATGCCG
ACAACGCCATGTACGAAGCGAAGAGGGGGGGCAAGAACTCCTGGCGGCGATGGAAGCCGGATTCTCCCGATACTGATGAA
GGTGTTCTTCTATGA

Upstream 100 bases:

>100_bases
CTACAAGATTTCTGTCCGTTGTTGGTGTTTAACGGCAACCGGCATCATTTATCCGGAGTGGAACGGTTGGGCACAGTAAT
AGCATCATCGAAAGAACCCT

Downstream 100 bases:

>100_bases
ATAGGCGCGAACTGATGGCCGGCGTCCTCCTGGGGAGCGCCGGCTTTCTCGTCAACTGGTTCAAACTGTCACTGTTCTTC
AACGTGGACTTTCTGTTCGG

Product: response regulator receiver modulated diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MKILYIDDKAEIRTLLGRYLKSWGYDALGAPNGESGWNLIQEHRPSIVITDWIMPDLEGPALCRRIRGAGFPEYTYIIML
TARRDDVVVGMEAGADDFIGKPFNKEELKVRIKAAERIVTLERELALTNLGLQEKNRRLEESEEQLRQMAHFDKLTGLPN
RLLFFERLERAVVESKRSESNFGLLFVDLDAFKAVNDNHGHKTGDELLVMAGQRMDGCVRASDTVARMGGDEFCIIVRGV
KSFDGPVTVAEKIISALSRPFDISGITCRIGASVGISVYPHDGDSVELLMTHADNAMYEAKRGGKNSWRRWKPDSPDTDE
GVLL

Sequences:

>Translated_324_residues
MKILYIDDKAEIRTLLGRYLKSWGYDALGAPNGESGWNLIQEHRPSIVITDWIMPDLEGPALCRRIRGAGFPEYTYIIML
TARRDDVVVGMEAGADDFIGKPFNKEELKVRIKAAERIVTLERELALTNLGLQEKNRRLEESEEQLRQMAHFDKLTGLPN
RLLFFERLERAVVESKRSESNFGLLFVDLDAFKAVNDNHGHKTGDELLVMAGQRMDGCVRASDTVARMGGDEFCIIVRGV
KSFDGPVTVAEKIISALSRPFDISGITCRIGASVGISVYPHDGDSVELLMTHADNAMYEAKRGGKNSWRRWKPDSPDTDE
GVLL
>Mature_324_residues
MKILYIDDKAEIRTLLGRYLKSWGYDALGAPNGESGWNLIQEHRPSIVITDWIMPDLEGPALCRRIRGAGFPEYTYIIML
TARRDDVVVGMEAGADDFIGKPFNKEELKVRIKAAERIVTLERELALTNLGLQEKNRRLEESEEQLRQMAHFDKLTGLPN
RLLFFERLERAVVESKRSESNFGLLFVDLDAFKAVNDNHGHKTGDELLVMAGQRMDGCVRASDTVARMGGDEFCIIVRGV
KSFDGPVTVAEKIISALSRPFDISGITCRIGASVGISVYPHDGDSVELLMTHADNAMYEAKRGGKNSWRRWKPDSPDTDE
GVLL

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=173, Percent_Identity=34.6820809248555, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1788381, Length=191, Percent_Identity=34.0314136125654, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87081881, Length=165, Percent_Identity=35.1515151515151, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=36.5269461077844, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787802, Length=240, Percent_Identity=27.0833333333333, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI145693134, Length=207, Percent_Identity=33.8164251207729, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=30.9941520467836, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789809, Length=118, Percent_Identity=39.8305084745763, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87081977, Length=195, Percent_Identity=29.2307692307692, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786599, Length=150, Percent_Identity=32, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1788956, Length=176, Percent_Identity=31.25, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=29.5180722891566, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788085, Length=171, Percent_Identity=29.2397660818713, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788394, Length=127, Percent_Identity=30.7086614173228, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081974, Length=155, Percent_Identity=29.6774193548387, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=32.5, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787375, Length=121, Percent_Identity=34.7107438016529, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790863, Length=142, Percent_Identity=32.3943661971831, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 36331; Mature: 36331

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILYIDDKAEIRTLLGRYLKSWGYDALGAPNGESGWNLIQEHRPSIVITDWIMPDLEGP
CEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCH
ALCRRIRGAGFPEYTYIIMLTARRDDVVVGMEAGADDFIGKPFNKEELKVRIKAAERIVT
HHHHHHHCCCCCCEEEEEEEEECCCCEEEEECCCCCHHCCCCCCHHHHEEEEEHHHHHHH
LERELALTNLGLQEKNRRLEESEEQLRQMAHFDKLTGLPNRLLFFERLERAVVESKRSES
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
NFGLLFVDLDAFKAVNDNHGHKTGDELLVMAGQRMDGCVRASDTVARMGGDEFCIIVRGV
CCCEEEEEHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHCCHHHHHCCCCCEEEEEECC
KSFDGPVTVAEKIISALSRPFDISGITCRIGASVGISVYPHDGDSVELLMTHADNAMYEA
CCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEEECCCHHHHH
KRGGKNSWRRWKPDSPDTDEGVLL
HCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKILYIDDKAEIRTLLGRYLKSWGYDALGAPNGESGWNLIQEHRPSIVITDWIMPDLEGP
CEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCH
ALCRRIRGAGFPEYTYIIMLTARRDDVVVGMEAGADDFIGKPFNKEELKVRIKAAERIVT
HHHHHHHCCCCCCEEEEEEEEECCCCEEEEECCCCCHHCCCCCCHHHHEEEEEHHHHHHH
LERELALTNLGLQEKNRRLEESEEQLRQMAHFDKLTGLPNRLLFFERLERAVVESKRSES
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
NFGLLFVDLDAFKAVNDNHGHKTGDELLVMAGQRMDGCVRASDTVARMGGDEFCIIVRGV
CCCEEEEEHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHCCHHHHHCCCCCEEEEEECC
KSFDGPVTVAEKIISALSRPFDISGITCRIGASVGISVYPHDGDSVELLMTHADNAMYEA
CCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEEECCCHHHHH
KRGGKNSWRRWKPDSPDTDEGVLL
HCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]