| Definition | Geobacter metallireducens GS-15 chromosome, complete genome. |
|---|---|
| Accession | NC_007517 |
| Length | 3,997,420 |
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The map label for this gene is 78222859
Identifier: 78222859
GI number: 78222859
Start: 1852920
End: 1854419
Strand: Direct
Name: 78222859
Synonym: Gmet_1650
Alternate gene names: NA
Gene position: 1852920-1854419 (Clockwise)
Preceding gene: 78222857
Following gene: 78222860
Centisome position: 46.35
GC content: 56.67
Gene sequence:
>1500_bases ATGAAACGGATGTGTGCTGCCCTGTGCCTCTGTCTTGCCGCGGTCCCAGCTTCGGCTGCGGAAGGCCAGATCTCACTGCC CCTTGCGGAGGCAGTCAGGAGTGCCGTCGAAAAGAATCTTGACGTTAAAGCCGAGCTTTACAATCCCGCCATGGCCCAGG CCGATATCCGGAAGAACGAAGGGATCTATGACACAACCCTCCGTTTGACCACGGATTTCAACTATTCAGTTACTGAACCA GCCAGCTCATTTCTTACCGGCAGTCTCACTAACCGGCAGAAAACCTTCGATATCAATCCTGGCATAAGCCAGCTCATACC GATAGGCGGAACCCTCGGGCTGACCTTCAACAACACGTACAACAGCAATAATTCTACGAGATCCTTCAATAATTACTGGA ATTCCGACCTTACCGTGAACCTTACCCAGCCGTTGTTGAAAAATTTCGGCAGGGAACCGACCGAGCTTGCCATCATGGTG GCGCGAAACAGCAAGGGGGAGTCCCTGGAGCGCTTCAGGACCACGCTTTCTGACACGGTTGCGCGGGTGAGGAATGAGTA CTTCAAGCTCTACAGCCTGCGCGGGGATCTGGAGGTGAAAACCACCTCTTTGCTCCTGGCCCGGAAGATTCTCGACGACA CCAAGGCTCGGGTAAAGGCGGGGGTTCTGCCTGCCATGGAGATCCTTAATGCCGAGTTTGGGGTGGCGAGCCGGGAGAAG GATCTGATCGATGCGGAAAAGGCGGTGCGCGACCAGAATGACGTGCTGAGGGTGCTCCTGCAGCTTACGGGCAGGGACGA GATTGTCCCGGTCGACATGCCGACGAAAGAACCCTTCGCCGTCAACGAGAAGGAGATGGTCAAGCGCGCCCTGGACAATC GCTCCGAAATCAGAGAGCAGTTGGCCGCCCTCAAATCGAGGGAGCTTGAAATGCGGGTGGCCCACAACAGGACGCTTCCC GACCTGAACCTGAGCGCCAGCGCTGCGCTGACCGGCCTTGATTCCCACTACAACCGGGATATGGAAAAGATCGGTTCGGC TGATTATCCGGTTTGGGGCGTAGGATTGCAGTTCGCGTATCCCTTGGGCAACAATGCCGCCGAGAACGATTACATCAGAA GCAAGCTCCGCTTGGAGCAAGCCAGGACCCAGGTGCGCAGCCTCGAAGCGAATGTGGAGAACGATGTCAAGGCAGCCATC CGGGGGGTGGAGTCGGGATACAAGCAAATTGATGTTACCGAGCGGGGCAGGGCCTTTGCCGAAGAGCGGCTTCGGTCCTT CATCAAGAAGAACGAAGTGGGGCTTGCCACCACAAAGGATGTACTCGATGTGGAAAACGATCTGGCCGCAGCCAAGATCA ACCAGATCAATGCCTTGGTCGGGTACACCGATGCCATAACCCAGCTCTGGCGGACCACGGGAGAAATCCTCGACCGGACA GGGGTTCAGTTGTCGGACACGGAGGGTGATTCCCTCTACGAGCGGCACGTCCACAACTGA
Upstream 100 bases:
>100_bases CAGGGCTCTATCGTTTATTTGACAATGGAAGAAAAAAACCGTTCGACCCCAAAAGGGAACAAACGCACTGCTTGATGGCC ATTTGAGGAGGAATTGACGA
Downstream 100 bases:
>100_bases AACCATCCTCTCATCGCTCCAAACCCACCGGAGATACACCATGAATCTATCTCTCTCGCCCCGCGACCCGTCGAGAAGCG GCATCCTGTCCCGTCGCGTT
Product: Outer membrane efflux protein
Products: NA
Alternate protein names: Outer Membrane Protein; Outer Membrane Efflux Family Protein; Acriflavin Resistance Protein; Outer Membrane Protein-Like; Outer Membrane Lipoprotein; RND Family Efflux Pump Outer Membrane Protein; Outer Membrane Channel Protein; Outer Membrane Protein-Like Protein; Outer Membrane Efflux Protein Family; Outer Efflux Pump Domain-Containing Protein
Number of amino acids: Translated: 499; Mature: 499
Protein sequence:
>499_residues MKRMCAALCLCLAAVPASAAEGQISLPLAEAVRSAVEKNLDVKAELYNPAMAQADIRKNEGIYDTTLRLTTDFNYSVTEP ASSFLTGSLTNRQKTFDINPGISQLIPIGGTLGLTFNNTYNSNNSTRSFNNYWNSDLTVNLTQPLLKNFGREPTELAIMV ARNSKGESLERFRTTLSDTVARVRNEYFKLYSLRGDLEVKTTSLLLARKILDDTKARVKAGVLPAMEILNAEFGVASREK DLIDAEKAVRDQNDVLRVLLQLTGRDEIVPVDMPTKEPFAVNEKEMVKRALDNRSEIREQLAALKSRELEMRVAHNRTLP DLNLSASAALTGLDSHYNRDMEKIGSADYPVWGVGLQFAYPLGNNAAENDYIRSKLRLEQARTQVRSLEANVENDVKAAI RGVESGYKQIDVTERGRAFAEERLRSFIKKNEVGLATTKDVLDVENDLAAAKINQINALVGYTDAITQLWRTTGEILDRT GVQLSDTEGDSLYERHVHN
Sequences:
>Translated_499_residues MKRMCAALCLCLAAVPASAAEGQISLPLAEAVRSAVEKNLDVKAELYNPAMAQADIRKNEGIYDTTLRLTTDFNYSVTEP ASSFLTGSLTNRQKTFDINPGISQLIPIGGTLGLTFNNTYNSNNSTRSFNNYWNSDLTVNLTQPLLKNFGREPTELAIMV ARNSKGESLERFRTTLSDTVARVRNEYFKLYSLRGDLEVKTTSLLLARKILDDTKARVKAGVLPAMEILNAEFGVASREK DLIDAEKAVRDQNDVLRVLLQLTGRDEIVPVDMPTKEPFAVNEKEMVKRALDNRSEIREQLAALKSRELEMRVAHNRTLP DLNLSASAALTGLDSHYNRDMEKIGSADYPVWGVGLQFAYPLGNNAAENDYIRSKLRLEQARTQVRSLEANVENDVKAAI RGVESGYKQIDVTERGRAFAEERLRSFIKKNEVGLATTKDVLDVENDLAAAKINQINALVGYTDAITQLWRTTGEILDRT GVQLSDTEGDSLYERHVHN >Mature_499_residues MKRMCAALCLCLAAVPASAAEGQISLPLAEAVRSAVEKNLDVKAELYNPAMAQADIRKNEGIYDTTLRLTTDFNYSVTEP ASSFLTGSLTNRQKTFDINPGISQLIPIGGTLGLTFNNTYNSNNSTRSFNNYWNSDLTVNLTQPLLKNFGREPTELAIMV ARNSKGESLERFRTTLSDTVARVRNEYFKLYSLRGDLEVKTTSLLLARKILDDTKARVKAGVLPAMEILNAEFGVASREK DLIDAEKAVRDQNDVLRVLLQLTGRDEIVPVDMPTKEPFAVNEKEMVKRALDNRSEIREQLAALKSRELEMRVAHNRTLP DLNLSASAALTGLDSHYNRDMEKIGSADYPVWGVGLQFAYPLGNNAAENDYIRSKLRLEQARTQVRSLEANVENDVKAAI RGVESGYKQIDVTERGRAFAEERLRSFIKKNEVGLATTKDVLDVENDLAAAKINQINALVGYTDAITQLWRTTGEILDRT GVQLSDTEGDSLYERHVHN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55539; Mature: 55539
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRMCAALCLCLAAVPASAAEGQISLPLAEAVRSAVEKNLDVKAELYNPAMAQADIRKNE CHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHCCCCEEECCCCHHHHHHHHCCC GIYDTTLRLTTDFNYSVTEPASSFLTGSLTNRQKTFDINPGISQLIPIGGTLGLTFNNTY CCEEEEEEEEECCCCEECCCHHHHHCCCCCCCCEEEECCCCHHHHCCCCCEEEEEECCCC NSNNSTRSFNNYWNSDLTVNLTQPLLKNFGREPTELAIMVARNSKGESLERFRTTLSDTV CCCCCCCCHHHCCCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH ARVRNEYFKLYSLRGDLEVKTTSLLLARKILDDTKARVKAGVLPAMEILNAEFGVASREK HHHHHHHHHHHEECCCCEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHH DLIDAEKAVRDQNDVLRVLLQLTGRDEIVPVDMPTKEPFAVNEKEMVKRALDNRSEIREQ HHHHHHHHHCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCHHHHHHH LAALKSRELEMRVAHNRTLPDLNLSASAALTGLDSHYNRDMEKIGSADYPVWGVGLQFAY HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCEEECCEEEEE PLGNNAAENDYIRSKLRLEQARTQVRSLEANVENDVKAAIRGVESGYKQIDVTERGRAFA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEECHHHHHHHHH EERLRSFIKKNEVGLATTKDVLDVENDLAAAKINQINALVGYTDAITQLWRTTGEILDRT HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GVQLSDTEGDSLYERHVHN CCEEECCCCCHHHHHHCCC >Mature Secondary Structure MKRMCAALCLCLAAVPASAAEGQISLPLAEAVRSAVEKNLDVKAELYNPAMAQADIRKNE CHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHCCCCEEECCCCHHHHHHHHCCC GIYDTTLRLTTDFNYSVTEPASSFLTGSLTNRQKTFDINPGISQLIPIGGTLGLTFNNTY CCEEEEEEEEECCCCEECCCHHHHHCCCCCCCCEEEECCCCHHHHCCCCCEEEEEECCCC NSNNSTRSFNNYWNSDLTVNLTQPLLKNFGREPTELAIMVARNSKGESLERFRTTLSDTV CCCCCCCCHHHCCCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH ARVRNEYFKLYSLRGDLEVKTTSLLLARKILDDTKARVKAGVLPAMEILNAEFGVASREK HHHHHHHHHHHEECCCCEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHH DLIDAEKAVRDQNDVLRVLLQLTGRDEIVPVDMPTKEPFAVNEKEMVKRALDNRSEIREQ HHHHHHHHHCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCHHHHHHH LAALKSRELEMRVAHNRTLPDLNLSASAALTGLDSHYNRDMEKIGSADYPVWGVGLQFAY HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCEEECCEEEEE PLGNNAAENDYIRSKLRLEQARTQVRSLEANVENDVKAAIRGVESGYKQIDVTERGRAFA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEECHHHHHHHHH EERLRSFIKKNEVGLATTKDVLDVENDLAAAKINQINALVGYTDAITQLWRTTGEILDRT HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GVQLSDTEGDSLYERHVHN CCEEECCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA