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The map label for this gene is yajD [H]

Identifier: 78222135

GI number: 78222135

Start: 1009589

End: 1009930

Strand: Direct

Name: yajD [H]

Synonym: Gmet_0915

Alternate gene names: 78222135

Gene position: 1009589-1009930 (Clockwise)

Preceding gene: 78222134

Following gene: 78222138

Centisome position: 25.26

GC content: 61.4

Gene sequence:

>342_bases
ATGGGACAGACGTTTAGACCCCGCCGATCGGGAAAGCCGGCCGAAAAGAGCCAGGCAGAACTTGACGAGATGGTGCGGCG
GATGCGGGGGGAGCAGAGCGCTTCCGGCAGCTACCGGGAGCAGTCGTTGAAAATCCACGGCTGGATCTGCGCCAAGTGCG
GCCGCGAGTTCGATCTCGCAAACCTCCATCTCCTCACAGTGCATCACCGGGATGGGAACCATCTCAATAATCCCCCCGAC
GGGAGCAACTGGGAGAATCTCTGCGTCTGGTGCCACGATGACGAGCACAGCCGCGGGGTGCTGGGGGATTACCTGAACGA
CGGCGAATCGCGGAGGAAATGA

Upstream 100 bases:

>100_bases
CAAAGGGAAGGGAAGAGGGAAGGGGCACAACAAATAGAGAAGAAAAGGGGGATCGTCCCTCTCTATTTTGAAAAGGCCCA
TTTGCCGGGAAGTGAAAGCC

Downstream 100 bases:

>100_bases
AAAAAGCCCCGGCCTGAAAAGGTCGGGGCTTTCGTGTGTCGGGAGCGTACCGGTTTGAATCGGAGTTGGCGATTACTTCC
CTTTCCCCGTGAGCCGCACC

Product: HNH endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MGQTFRPRRSGKPAEKSQAELDEMVRRMRGEQSASGSYREQSLKIHGWICAKCGREFDLANLHLLTVHHRDGNHLNNPPD
GSNWENLCVWCHDDEHSRGVLGDYLNDGESRRK

Sequences:

>Translated_113_residues
MGQTFRPRRSGKPAEKSQAELDEMVRRMRGEQSASGSYREQSLKIHGWICAKCGREFDLANLHLLTVHHRDGNHLNNPPD
GSNWENLCVWCHDDEHSRGVLGDYLNDGESRRK
>Mature_112_residues
GQTFRPRRSGKPAEKSQAELDEMVRRMRGEQSASGSYREQSLKIHGWICAKCGREFDLANLHLLTVHHRDGNHLNNPPDG
SNWENLCVWCHDDEHSRGVLGDYLNDGESRRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786611, Length=66, Percent_Identity=59.0909090909091, Blast_Score=92, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002711
- InterPro:   IPR003615
- InterPro:   IPR015880 [H]

Pfam domain/function: PF01844 HNH [H]

EC number: NA

Molecular weight: Translated: 12985; Mature: 12853

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQTFRPRRSGKPAEKSQAELDEMVRRMRGEQSASGSYREQSLKIHGWICAKCGREFDLA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCC
NLHLLTVHHRDGNHLNNPPDGSNWENLCVWCHDDEHSRGVLGDYLNDGESRRK
CEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHCCCCCCCC
>Mature Secondary Structure 
GQTFRPRRSGKPAEKSQAELDEMVRRMRGEQSASGSYREQSLKIHGWICAKCGREFDLA
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCC
NLHLLTVHHRDGNHLNNPPDGSNWENLCVWCHDDEHSRGVLGDYLNDGESRRK
CEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]