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The map label for this gene is ccsA [H]

Identifier: 78221794

GI number: 78221794

Start: 620728

End: 621564

Strand: Direct

Name: ccsA [H]

Synonym: Gmet_0573

Alternate gene names: 78221794

Gene position: 620728-621564 (Clockwise)

Preceding gene: 78221793

Following gene: 78221795

Centisome position: 15.53

GC content: 52.09

Gene sequence:

>837_bases
ATGTTCAATGGGAATGATCCGGTTATCATAGATGTTTCAGTCCACTGGATTGCGGTTATTGTGTACGTGCTGGCCACAAT
CAGCAATGTTTGGGGTGTGGTGTTCACGAAGAAAAAGGCTGTGCAATGGAGCTACTTCCTGGCATACCTGGGTCTCGCTA
TCCACGGGCTTGTCCTGCTTTACCGGTGGGTGATAACCGGCCATGGCCCGTATATGGCCCGGTACGAAATCCTTTCTTCA
AATGCGTGGGTGCTCCTGGTGCTGTTTCTTGTGTTCGGCAAGGTTTATCCAAAGATCAAGCCGGCAAGCATCGTCGTTTT
CCCGGCAACATTTCTTCTCATTGCCCTGGGCCTTTTCTTCAACCCCGAGATGACCAGGATGCCCCCCAGCATGCGGAGCA
TCTGGCTTGTTCTGCATGTCTTATTTTACAAGATTTCAGTGGCAACCATTCTTGTCGCACTGGCATTTTCCCTGGTCCTG
ATCCTGAAAACCAGAACCTCGTACACATGGCTGGAACGGCTTCCATCCATCGAAGTCGTTGACGTCTACGCCTACCGTTT
TGCCGGATTCAGCTTTGTGTTCTGGGCCATTGCCATGCTTGCCGGTTCCATATGGGCCTATCAGCTATGGGGGAGATTCT
GGGGGTGGGATCCCGTGGAAACCTGGTCACTCATCACGTGGGGGGCATTTGGCATGTATCTTCACCTGCGCAGGTTTTTC
GGCTGGAAAGGGGAGCGGGCAGCCTACTTTTACCTGCTCTGCACGTTCGTATCGATTGTGGCGCTCTATTTTACGCCCTT
GCTGGAGACATCCATCCATTCGGAGTATTTCAGGTGA

Upstream 100 bases:

>100_bases
GGCGGCCTTGGGCGCTATGCACGAGCAAGCCGAAGCCGGGCCGGTTCAGTGAATTGGATTACGTCTTCACAAGAGGGCTT
GAACGAAGGGAACGGTTGCC

Downstream 100 bases:

>100_bases
TACGGAAAATTCTCGTATTCGCGCTATTGTGTCTCTTGTCTGCCGGTTGTGGCCGTGACAGTGCCGATGTGGCGCAGATC
AAGAGGGGTATTGCCCGTTA

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MFNGNDPVIIDVSVHWIAVIVYVLATISNVWGVVFTKKKAVQWSYFLAYLGLAIHGLVLLYRWVITGHGPYMARYEILSS
NAWVLLVLFLVFGKVYPKIKPASIVVFPATFLLIALGLFFNPEMTRMPPSMRSIWLVLHVLFYKISVATILVALAFSLVL
ILKTRTSYTWLERLPSIEVVDVYAYRFAGFSFVFWAIAMLAGSIWAYQLWGRFWGWDPVETWSLITWGAFGMYLHLRRFF
GWKGERAAYFYLLCTFVSIVALYFTPLLETSIHSEYFR

Sequences:

>Translated_278_residues
MFNGNDPVIIDVSVHWIAVIVYVLATISNVWGVVFTKKKAVQWSYFLAYLGLAIHGLVLLYRWVITGHGPYMARYEILSS
NAWVLLVLFLVFGKVYPKIKPASIVVFPATFLLIALGLFFNPEMTRMPPSMRSIWLVLHVLFYKISVATILVALAFSLVL
ILKTRTSYTWLERLPSIEVVDVYAYRFAGFSFVFWAIAMLAGSIWAYQLWGRFWGWDPVETWSLITWGAFGMYLHLRRFF
GWKGERAAYFYLLCTFVSIVALYFTPLLETSIHSEYFR
>Mature_278_residues
MFNGNDPVIIDVSVHWIAVIVYVLATISNVWGVVFTKKKAVQWSYFLAYLGLAIHGLVLLYRWVITGHGPYMARYEILSS
NAWVLLVLFLVFGKVYPKIKPASIVVFPATFLLIALGLFFNPEMTRMPPSMRSIWLVLHVLFYKISVATILVALAFSLVL
ILKTRTSYTWLERLPSIEVVDVYAYRFAGFSFVFWAIAMLAGSIWAYQLWGRFWGWDPVETWSLITWGAFGMYLHLRRFF
GWKGERAAYFYLLCTFVSIVALYFTPLLETSIHSEYFR

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 32186; Mature: 32186

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNGNDPVIIDVSVHWIAVIVYVLATISNVWGVVFTKKKAVQWSYFLAYLGLAIHGLVLL
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHH
YRWVITGHGPYMARYEILSSNAWVLLVLFLVFGKVYPKIKPASIVVFPATFLLIALGLFF
HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHC
NPEMTRMPPSMRSIWLVLHVLFYKISVATILVALAFSLVLILKTRTSYTWLERLPSIEVV
CCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEE
DVYAYRFAGFSFVFWAIAMLAGSIWAYQLWGRFWGWDPVETWSLITWGAFGMYLHLRRFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
GWKGERAAYFYLLCTFVSIVALYFTPLLETSIHSEYFR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFNGNDPVIIDVSVHWIAVIVYVLATISNVWGVVFTKKKAVQWSYFLAYLGLAIHGLVLL
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHH
YRWVITGHGPYMARYEILSSNAWVLLVLFLVFGKVYPKIKPASIVVFPATFLLIALGLFF
HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHC
NPEMTRMPPSMRSIWLVLHVLFYKISVATILVALAFSLVLILKTRTSYTWLERLPSIEVV
CCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEE
DVYAYRFAGFSFVFWAIAMLAGSIWAYQLWGRFWGWDPVETWSLITWGAFGMYLHLRRFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
GWKGERAAYFYLLCTFVSIVALYFTPLLETSIHSEYFR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA