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The map label for this gene is rnjA [H]

Identifier: 78221587

GI number: 78221587

Start: 408042

End: 409718

Strand: Direct

Name: rnjA [H]

Synonym: Gmet_0366

Alternate gene names: 78221587

Gene position: 408042-409718 (Clockwise)

Preceding gene: 78221586

Following gene: 78221588

Centisome position: 10.21

GC content: 63.57

Gene sequence:

>1677_bases
ATGGAAACTGATCAGAACCAACCCGCCGGCCTGCGCGTCATCCCCCTGGGGGGGGTGGGGGAGATCGGCCTCAACATGAT
GGTCTACGAGTACGGCGACGACATCATCGTGGCCGACTGCGGACTCATGTTCCCCGAGCCCCACATGCTCGGCATCGATA
TCGTCATCCCCGACATCACCTACCTGCGTGAGCGGGCCGACCGGGTGCGGGGGATCTTCCTGACCCATGGCCATGAAGAC
CACATCGGCGCCCTTCCCTACGTCCTTCCCGAGCTTCCCGTTCCCATTTTCGGCACAGCCCTCACTCTCGGCTTCGTGCG
GGAGAAACTGAAGGAGTTCGACCTCGACAGCTCCACGGACCTGAGCGTGGTGAAGCCTCGGGAGTCGGTAACCGTCGGCC
CCTTCAAGGTGGAGTTCATCCGGGTCTCCCACTCCATTGTTGACGGCTGCGCCCTGGCGATCCGCACCCCCGAGGGGGTG
GTGATCCACACCGGCGACTTCAAGATCGACCAGACCCCTGTTGATGGCGAGCTGACTGACCTGGCCTCCTTTGCCCGCTA
CGGCTCCGAGGGGGTCCTGGCGCTCTTCTCCGACTCCACCAACGTGGAACGGCAGGGGTACACCCTGTCGGAGCGGCTGG
TGGGGGAGGCCTTTGACGAGATATTTCCCCGCTGTCCGGGGCGGATCATCGTGGCGGCTTTCTCCAGCAACATCCACCGG
GTGCAGCAGGCGGTGGAGTCCGCGGCCCGCTGCGGTCGCAAGGTGCTCCTGAACGGCCGCTCCATGATCGCCAACGTGGC
CATTGCCCGGCAGCTGGGGTACCTGCGTATCCCCGACGATGTGCTGATCGACCTTCGGGAGATGCCGCGCCTGCCGCCGG
AGCAGGTCTGCATGATCACTACCGGTTCCCAGGGAGAGCCCATGAGCGCCCTGACCCGCATCGCCATGGACGACCACAAG
CAGATCAAGCTGGAGAAGGGGGACACGGTGATCCTCTCCTCCCGCTTCATCCCCGGGAACGAGAAGACCATCTCCGACCT
CATCAACCACCTTTACCGCCGGGGGGCCGAGGTCTTTCACGAGAAGGTGTCCGAGGTGCACGTGTCGGGCCATGCCTCCC
GGGAGGAGCTGAAGTTGATGATCAACCTGGTGCGGCCCAAATTTTTCGTGCCGGTCCATGGCGAGTACCGGCACCTGGTG
AAGCATTCCCGGCTGGCCCAGCGGGTGGGGGTCCCGGAGGAGCGCTGCCTCGTGGTTGAGAACGGTGCAGTGATCCGCTT
CGCCGACGGAGCGGCCGAGGTGGCCGGCAGCGTCGCGAACGGCCGGGTATTCATCGACGGCAAGGGGATCGGCGACGTGG
GGGCGGTGGTCCTCAAGGACCGCAAGCACCTCTCCGAGGACGGAATGGTGGTGGTCATCATCTCCATCAACCCCCAGACG
GGCGAGATTCTCTATGGTCCCGACATCGTCTCCCGCGGGTTCGTTTTCGAGGACGAGAGCCAGGAGTACCTGGATGAAAC
GAAGAAGATAGTCCTGGACCTCCTGGCCGGGATGTCGCCGGAAGTCCTCAAGGACTGGAACGAGGTGAAGCAGGAAGTGC
GGCGCATCCTGAGACGTTTCTTCAACAAGACCATTGAGCGGCGGCCAGTGATCCTGCCGCTGATTATAGAGATGTAG

Upstream 100 bases:

>100_bases
CGCGCAGCCGGGGGAGGAGTGGATCGAGGGGTGCGATCGGAAGATCGCGGAGATTCTCGGACGGCAGGGGTACCCCCCTC
CCGCCCCGAGGTAGGGTGCC

Downstream 100 bases:

>100_bases
GAATGGACGAACAGATCGACAAGAAAGAAAAACTGAAGAAGGAGATCCAGGGGATGGCCCTCGGCGCGCTGGGGCTCTTC
ATCCTCATTGCCCTTGTGTC

Product: hypothetical protein

Products: NA

Alternate protein names: RNase J1 [H]

Number of amino acids: Translated: 558; Mature: 558

Protein sequence:

>558_residues
METDQNQPAGLRVIPLGGVGEIGLNMMVYEYGDDIIVADCGLMFPEPHMLGIDIVIPDITYLRERADRVRGIFLTHGHED
HIGALPYVLPELPVPIFGTALTLGFVREKLKEFDLDSSTDLSVVKPRESVTVGPFKVEFIRVSHSIVDGCALAIRTPEGV
VIHTGDFKIDQTPVDGELTDLASFARYGSEGVLALFSDSTNVERQGYTLSERLVGEAFDEIFPRCPGRIIVAAFSSNIHR
VQQAVESAARCGRKVLLNGRSMIANVAIARQLGYLRIPDDVLIDLREMPRLPPEQVCMITTGSQGEPMSALTRIAMDDHK
QIKLEKGDTVILSSRFIPGNEKTISDLINHLYRRGAEVFHEKVSEVHVSGHASREELKLMINLVRPKFFVPVHGEYRHLV
KHSRLAQRVGVPEERCLVVENGAVIRFADGAAEVAGSVANGRVFIDGKGIGDVGAVVLKDRKHLSEDGMVVVIISINPQT
GEILYGPDIVSRGFVFEDESQEYLDETKKIVLDLLAGMSPEVLKDWNEVKQEVRRILRRFFNKTIERRPVILPLIIEM

Sequences:

>Translated_558_residues
METDQNQPAGLRVIPLGGVGEIGLNMMVYEYGDDIIVADCGLMFPEPHMLGIDIVIPDITYLRERADRVRGIFLTHGHED
HIGALPYVLPELPVPIFGTALTLGFVREKLKEFDLDSSTDLSVVKPRESVTVGPFKVEFIRVSHSIVDGCALAIRTPEGV
VIHTGDFKIDQTPVDGELTDLASFARYGSEGVLALFSDSTNVERQGYTLSERLVGEAFDEIFPRCPGRIIVAAFSSNIHR
VQQAVESAARCGRKVLLNGRSMIANVAIARQLGYLRIPDDVLIDLREMPRLPPEQVCMITTGSQGEPMSALTRIAMDDHK
QIKLEKGDTVILSSRFIPGNEKTISDLINHLYRRGAEVFHEKVSEVHVSGHASREELKLMINLVRPKFFVPVHGEYRHLV
KHSRLAQRVGVPEERCLVVENGAVIRFADGAAEVAGSVANGRVFIDGKGIGDVGAVVLKDRKHLSEDGMVVVIISINPQT
GEILYGPDIVSRGFVFEDESQEYLDETKKIVLDLLAGMSPEVLKDWNEVKQEVRRILRRFFNKTIERRPVILPLIIEM
>Mature_558_residues
METDQNQPAGLRVIPLGGVGEIGLNMMVYEYGDDIIVADCGLMFPEPHMLGIDIVIPDITYLRERADRVRGIFLTHGHED
HIGALPYVLPELPVPIFGTALTLGFVREKLKEFDLDSSTDLSVVKPRESVTVGPFKVEFIRVSHSIVDGCALAIRTPEGV
VIHTGDFKIDQTPVDGELTDLASFARYGSEGVLALFSDSTNVERQGYTLSERLVGEAFDEIFPRCPGRIIVAAFSSNIHR
VQQAVESAARCGRKVLLNGRSMIANVAIARQLGYLRIPDDVLIDLREMPRLPPEQVCMITTGSQGEPMSALTRIAMDDHK
QIKLEKGDTVILSSRFIPGNEKTISDLINHLYRRGAEVFHEKVSEVHVSGHASREELKLMINLVRPKFFVPVHGEYRHLV
KHSRLAQRVGVPEERCLVVENGAVIRFADGAAEVAGSVANGRVFIDGKGIGDVGAVVLKDRKHLSEDGMVVVIISINPQT
GEILYGPDIVSRGFVFEDESQEYLDETKKIVLDLLAGMSPEVLKDWNEVKQEVRRILRRFFNKTIERRPVILPLIIEM

Specific function: Cleaves the 5'-leader sequence of certain mRNAs. May play a role in maturation and stability of specific mRNAs. Is also required for the maturation of the 16S rRNA. Acts preferentially on 16S rRNA precursors after association of the 30S and 50S ribosomal

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 61977; Mature: 61977

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METDQNQPAGLRVIPLGGVGEIGLNMMVYEYGDDIIVADCGLMFPEPHMLGIDIVIPDIT
CCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEECCCCCCCCCEEEEEEEECCHH
YLRERADRVRGIFLTHGHEDHIGALPYVLPELPVPIFGTALTLGFVREKLKEFDLDSSTD
HHHHHHHHHCEEEEECCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
LSVVKPRESVTVGPFKVEFIRVSHSIVDGCALAIRTPEGVVIHTGDFKIDQTPVDGELTD
CEEECCCCCEEECCEEEEEEEEHHHHHCCEEEEEECCCCEEEECCCEEECCCCCCCCHHH
LASFARYGSEGVLALFSDSTNVERQGYTLSERLVGEAFDEIFPRCPGRIIVAAFSSNIHR
HHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHCCHHH
VQQAVESAARCGRKVLLNGRSMIANVAIARQLGYLRIPDDVLIDLREMPRLPPEQVCMIT
HHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCEECCHHHHHHHHHCCCCCHHHEEEEE
TGSQGEPMSALTRIAMDDHKQIKLEKGDTVILSSRFIPGNEKTISDLINHLYRRGAEVFH
ECCCCCCHHHHHHHHCCCCCEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
EKVSEVHVSGHASREELKLMINLVRPKFFVPVHGEYRHLVKHSRLAQRVGVPEERCLVVE
HHHHHEECCCCCCHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHEEEEE
NGAVIRFADGAAEVAGSVANGRVFIDGKGIGDVGAVVLKDRKHLSEDGMVVVIISINPQT
CCCEEEECCCHHHHHCCCCCCEEEEECCCCCCHHHHEEHHHHHCCCCCEEEEEEEECCCC
GEILYGPDIVSRGFVFEDESQEYLDETKKIVLDLLAGMSPEVLKDWNEVKQEVRRILRRF
CCEEECCCHHHCCCEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
FNKTIERRPVILPLIIEM
HHHHHHCCCEEEEEEEEC
>Mature Secondary Structure
METDQNQPAGLRVIPLGGVGEIGLNMMVYEYGDDIIVADCGLMFPEPHMLGIDIVIPDIT
CCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEECCCCCCCCCEEEEEEEECCHH
YLRERADRVRGIFLTHGHEDHIGALPYVLPELPVPIFGTALTLGFVREKLKEFDLDSSTD
HHHHHHHHHCEEEEECCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
LSVVKPRESVTVGPFKVEFIRVSHSIVDGCALAIRTPEGVVIHTGDFKIDQTPVDGELTD
CEEECCCCCEEECCEEEEEEEEHHHHHCCEEEEEECCCCEEEECCCEEECCCCCCCCHHH
LASFARYGSEGVLALFSDSTNVERQGYTLSERLVGEAFDEIFPRCPGRIIVAAFSSNIHR
HHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHCCHHH
VQQAVESAARCGRKVLLNGRSMIANVAIARQLGYLRIPDDVLIDLREMPRLPPEQVCMIT
HHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCEECCHHHHHHHHHCCCCCHHHEEEEE
TGSQGEPMSALTRIAMDDHKQIKLEKGDTVILSSRFIPGNEKTISDLINHLYRRGAEVFH
ECCCCCCHHHHHHHHCCCCCEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
EKVSEVHVSGHASREELKLMINLVRPKFFVPVHGEYRHLVKHSRLAQRVGVPEERCLVVE
HHHHHEECCCCCCHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHEEEEE
NGAVIRFADGAAEVAGSVANGRVFIDGKGIGDVGAVVLKDRKHLSEDGMVVVIISINPQT
CCCEEEECCCHHHHHCCCCCCEEEEECCCCCCHHHHEEHHHHHCCCCCEEEEEEEECCCC
GEILYGPDIVSRGFVFEDESQEYLDETKKIVLDLLAGMSPEVLKDWNEVKQEVRRILRRF
CCEEECCCHHHCCCEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
FNKTIERRPVILPLIIEM
HHHHHHCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969500; 9384377 [H]