Click here to switch to the map view.

The map label for this gene is yadS [H]

Identifier: 78221477

GI number: 78221477

Start: 284197

End: 284814

Strand: Reverse

Name: yadS [H]

Synonym: Gmet_0254

Alternate gene names: 78221477

Gene position: 284814-284197 (Counterclockwise)

Preceding gene: 78221481

Following gene: 78221466

Centisome position: 7.12

GC content: 64.72

Gene sequence:

>618_bases
ATGAACCTGCTCTATGCCCTCGACCTGCTCGGAACCGCCGCCTTCGCCGCCTCGGGCGCCTGGGCCGGCATCCGCCGCGA
TATGGACCTCTTCGGCGTGCTCATGCTCGGCCTCGTCACCGCTACGGGTGGCGGAACCCTGCGCGACCTGTTCCTGGGGG
ACACCCCCCCCTTCATCTTCAAGGACGAAACCTACCTCTACCTCTCCATCGCCGTTTCCCTGGCTATCTTTCTCTTCCAC
AAGCGCCTGGAATTCCTCCATCACCCCCTTCTCTACTTCGACGCCGTGGGGCTCGGCACCTTCGTGGTCATCGGCACGGG
TAAGGCCCTGGCATTCAAAATGGGGTTTGTCGGCTCGGTGATGATGGGGGTGATGACCGCCACCGCCGGAGGGATGATCC
GTGACGTCCTCTCCACCCATATTCCCCTGGTGCTGCAGAAGGAGGTGTACGCCTCGGCCTGCATCGCCGGCGCGGCTCTT
CTCTTCCTGCTGGACCGGATCTCCTTTCCCCGCACCCTGTCCCTTCTCGCCGCCGCCATGACGGTCATCGTGGTGCGGCT
CCTGGCCATCCGCTACAACTGGTCCCTCCCCCGGGCCGGGGGCGAGCGAAACGCATGA

Upstream 100 bases:

>100_bases
ATGAAAGCCCGGGGGAGTGCAATCCCTGAACCTCGGGCTCACAAACTTCGCATTGCGTTCCCCTTGGAGAGCAGGTAAGC
TCTCGGCAAAAGGAGAACCC

Downstream 100 bases:

>100_bases
GCGTCGCGCAATATGATGAAGGAGCTGATGGAATTTACCGCTGGAGATAGAGAGCCAGGACCATCAGAAGCGGGAAGAGG
TTAAGGCTGGAGAAGAGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MNLLYALDLLGTAAFAASGAWAGIRRDMDLFGVLMLGLVTATGGGTLRDLFLGDTPPFIFKDETYLYLSIAVSLAIFLFH
KRLEFLHHPLLYFDAVGLGTFVVIGTGKALAFKMGFVGSVMMGVMTATAGGMIRDVLSTHIPLVLQKEVYASACIAGAAL
LFLLDRISFPRTLSLLAAAMTVIVVRLLAIRYNWSLPRAGGERNA

Sequences:

>Translated_205_residues
MNLLYALDLLGTAAFAASGAWAGIRRDMDLFGVLMLGLVTATGGGTLRDLFLGDTPPFIFKDETYLYLSIAVSLAIFLFH
KRLEFLHHPLLYFDAVGLGTFVVIGTGKALAFKMGFVGSVMMGVMTATAGGMIRDVLSTHIPLVLQKEVYASACIAGAAL
LFLLDRISFPRTLSLLAAAMTVIVVRLLAIRYNWSLPRAGGERNA
>Mature_205_residues
MNLLYALDLLGTAAFAASGAWAGIRRDMDLFGVLMLGLVTATGGGTLRDLFLGDTPPFIFKDETYLYLSIAVSLAIFLFH
KRLEFLHHPLLYFDAVGLGTFVVIGTGKALAFKMGFVGSVMMGVMTATAGGMIRDVLSTHIPLVLQKEVYASACIAGAAL
LFLLDRISFPRTLSLLAAAMTVIVVRLLAIRYNWSLPRAGGERNA

Specific function: Unknown

COG id: COG2860

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0126 family [H]

Homologues:

Organism=Escherichia coli, GI1786352, Length=204, Percent_Identity=41.1764705882353, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI87082304, Length=164, Percent_Identity=37.1951219512195, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005115 [H]

Pfam domain/function: PF03458 UPF0126 [H]

EC number: NA

Molecular weight: Translated: 22064; Mature: 22064

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLYALDLLGTAAFAASGAWAGIRRDMDLFGVLMLGLVTATGGGTLRDLFLGDTPPFIF
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEE
KDETYLYLSIAVSLAIFLFHKRLEFLHHPLLYFDAVGLGTFVVIGTGKALAFKMGFVGSV
CCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHH
MMGVMTATAGGMIRDVLSTHIPLVLQKEVYASACIAGAALLFLLDRISFPRTLSLLAAAM
HHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
TVIVVRLLAIRYNWSLPRAGGERNA
HHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MNLLYALDLLGTAAFAASGAWAGIRRDMDLFGVLMLGLVTATGGGTLRDLFLGDTPPFIF
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEE
KDETYLYLSIAVSLAIFLFHKRLEFLHHPLLYFDAVGLGTFVVIGTGKALAFKMGFVGSV
CCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHH
MMGVMTATAGGMIRDVLSTHIPLVLQKEVYASACIAGAALLFLLDRISFPRTLSLLAAAM
HHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
TVIVVRLLAIRYNWSLPRAGGERNA
HHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA