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The map label for this gene is ccsA [H]

Identifier: 78221368

GI number: 78221368

Start: 170135

End: 170854

Strand: Reverse

Name: ccsA [H]

Synonym: Gmet_0141

Alternate gene names: 78221368

Gene position: 170854-170135 (Counterclockwise)

Preceding gene: 78221400

Following gene: 78221367

Centisome position: 4.27

GC content: 65.42

Gene sequence:

>720_bases
ATGAAATGGCTCCTCATTCTTTCGGCAGGACTTTACCTCTTCGGCGCCTTCCGCCGCCCCTTCTTCGCGGCGGGGCTCGC
GGCCGGCGCGGCCTACTTGGCAGTCCGGGGGATCGAGCTGGGGCGGCTCCCCCTGGTGGGGCCCCACGACACCCTCGCGT
TCTTCTCCGTCTCCATCGGCCTCATGGCGCTGCCGTTCCTCTTGTCGCCCGCGCTGCGGCAACAATCTTTCTTTTCCTGG
GGAATGGGGTGCGCCGCGGCCCTCTTCGGGCTCATGGCCCTGCTCTTTCCCGCCTTCGCCATGCCGCTTCCCCCCGTTCT
CCGCACCCTCTGGTTCGAGCTCCACGTGGCGCTGGCCTTTTTCTCCTACGCCCTCTTCGCCATCGGCGCGGTCCTCGGGG
GCATCTTCCTGGCCGGCGGGGAGCGGCGGATTCTTGACCTCCAGTACCGGGCCGCGCTGGTGGGGTACACCTTTTTCTCC
GCATCCATGGTATCGGGGGGGATCTGGGGGTACTTCGCCTGGGGGACCTACTGGCTCTGGACCCCGAAGGAGTTCTGGAC
CTCCATCCTCTGGATATTCTATACCTTCTGGCTCCATCTGCGACTCCGGGGGACGGGGGGTGACAAGGCCCTGGCCTGGA
GCGGCATCGTCGGGTTCGCGGTCGCGCTCTTCACCTACCTGGGAGTGAGCATCCTGATGAAGAGCTCCCACAGTTTCTAA

Upstream 100 bases:

>100_bases
TTGACGCAGGTCAAAAAGCGCGGAAAGCACAGGTTGCGTTCGGCCCGCCAAGCGTTCTGCGGCTTCCCTTCTCCCGGCGA
ATGTGCTATAGCCGAACCCT

Downstream 100 bases:

>100_bases
AAGGCCTGAATCCGCGACGGCTACCGCACCATTTCGCTCCGAGTGCCGCTCGCACCGCCGCTGTACAGCTCATTTCGCTA
GCGGCCTGTAACTCACCCTG

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKWLLILSAGLYLFGAFRRPFFAAGLAAGAAYLAVRGIELGRLPLVGPHDTLAFFSVSIGLMALPFLLSPALRQQSFFSW
GMGCAAALFGLMALLFPAFAMPLPPVLRTLWFELHVALAFFSYALFAIGAVLGGIFLAGGERRILDLQYRAALVGYTFFS
ASMVSGGIWGYFAWGTYWLWTPKEFWTSILWIFYTFWLHLRLRGTGGDKALAWSGIVGFAVALFTYLGVSILMKSSHSF

Sequences:

>Translated_239_residues
MKWLLILSAGLYLFGAFRRPFFAAGLAAGAAYLAVRGIELGRLPLVGPHDTLAFFSVSIGLMALPFLLSPALRQQSFFSW
GMGCAAALFGLMALLFPAFAMPLPPVLRTLWFELHVALAFFSYALFAIGAVLGGIFLAGGERRILDLQYRAALVGYTFFS
ASMVSGGIWGYFAWGTYWLWTPKEFWTSILWIFYTFWLHLRLRGTGGDKALAWSGIVGFAVALFTYLGVSILMKSSHSF
>Mature_239_residues
MKWLLILSAGLYLFGAFRRPFFAAGLAAGAAYLAVRGIELGRLPLVGPHDTLAFFSVSIGLMALPFLLSPALRQQSFFSW
GMGCAAALFGLMALLFPAFAMPLPPVLRTLWFELHVALAFFSYALFAIGAVLGGIFLAGGERRILDLQYRAALVGYTFFS
ASMVSGGIWGYFAWGTYWLWTPKEFWTSILWIFYTFWLHLRLRGTGGDKALAWSGIVGFAVALFTYLGVSILMKSSHSF

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 26360; Mature: 26360

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWLLILSAGLYLFGAFRRPFFAAGLAAGAAYLAVRGIELGRLPLVGPHDTLAFFSVSIG
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
LMALPFLLSPALRQQSFFSWGMGCAAALFGLMALLFPAFAMPLPPVLRTLWFELHVALAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
FSYALFAIGAVLGGIFLAGGERRILDLQYRAALVGYTFFSASMVSGGIWGYFAWGTYWLW
HHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEHHCEEEEE
TPKEFWTSILWIFYTFWLHLRLRGTGGDKALAWSGIVGFAVALFTYLGVSILMKSSHSF
CCHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKWLLILSAGLYLFGAFRRPFFAAGLAAGAAYLAVRGIELGRLPLVGPHDTLAFFSVSIG
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
LMALPFLLSPALRQQSFFSWGMGCAAALFGLMALLFPAFAMPLPPVLRTLWFELHVALAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
FSYALFAIGAVLGGIFLAGGERRILDLQYRAALVGYTFFSASMVSGGIWGYFAWGTYWLW
HHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEHHCEEEEE
TPKEFWTSILWIFYTFWLHLRLRGTGGDKALAWSGIVGFAVALFTYLGVSILMKSSHSF
CCHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA