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The map label for this gene is bphB [H]

Identifier: 78221239

GI number: 78221239

Start: 17225

End: 18676

Strand: Direct

Name: bphB [H]

Synonym: Gmet_0011

Alternate gene names: 78221239

Gene position: 17225-18676 (Clockwise)

Preceding gene: 78221238

Following gene: 78221240

Centisome position: 0.43

GC content: 62.47

Gene sequence:

>1452_bases
ATGAAACTGCCGTACCACACCATGCCTTTCAGGATCGCGGCGTACTATGCCCTCTGTGCAGGGCTCTGGATCCTCCTGTC
CGACCGGCTCCTCGGGGTTGCCGTTCGGGATCCCGACCTCATCACCAGCCTGGAGACGGCAAAGGGATGGCTCTTTGTGG
CGGTCACCGCCCTCCTCCTCCATGTGGTGGTCCGGCGCTTCGTCGATGAGGTGATGCGCCGGGAGGAACTTCTGCGGGAG
CGCAACGAAGAGCTCTGCATGGTGGAGGAGGAGCTCCGCCAGCAGCTGGACGAGTCCGAGCGGGCCCAGCAAGAACTGCG
GGAGAGCGAGGAAAACTACCGGCTCCTCTTTTCGAGCAATCCGCATCCCATGTGCGTTTTCGATCTGGAGACCCTCGCCT
TCCTGGAGGTGAACGGATCGGCTATCCAGCATTACGGATACAGCCGCGAAGAGTTTCTTGCCATGACCATCAAGGACATC
CGTCCCCCCGAGGATGTGCCGTCGCTCATGGCTATCGTGAAGCGGGTCGACAGCGGGCCTGACCGGGTCGGCGTTTGGCG
CCACCGGAAAAAGGACGGCACGATCATCTCCGTGGAGATCACCTCTCACATGATCGATTTCGCCGGAAGGCGTGCGAAGG
TGATTCTGTGCAATGACGTAACGGAGCGGATCAGAGCGAAGGAGGAGATCCTGCGACTCAACGCCGAGTTGGAGCAGCGG
GTGCGGCAACGGACCGCGGAACTGGAGCAGGCCAACCGGGAGATGGAGTCCTTCAGCTATTCCGTTTCCCACGACCTGCG
GGCGCCGCTACGCCACATCGACGGGTTCAGTCGGGTGCTTCTGGAAGACTGCGGCGACCAGCTCAATCAGGAGGGAAAGG
GATACCTTACCCGGATCTGCGCCGCTGCCAACCGGATGGGGCAGCTCATCGACGATCTCCTCCAGCTGGCCTCCGTGAGC
CGCAGCGAACTGCAACGGCGCCCCGTCGATTTCAGTAACCTGGCTCGGACTATAGCCTTGGAACTGAAGCAGACAGACCC
GGAGCGTGAGGTTACCTTCACCATTGCCGGGGGGGTCAGCGCTCAGGGAGATCCCGTCCTCCTGCGGGTCGTGCTGGAAA
ACCTCCTGGGTAACGCCTGGAAATACACGGGGAAGAATCACCGCACCGCAATCGAGTTCGGGGCAGTCGAGGGGGAGGAG
GGACGGGTCTACTTCGTGCGGGATAACGGGGTCGGCTTCGACATGACCTACGTGGGCAAGCTTTTCACCCCCTTCCAGCG
GCTTCACGCCATGGACGAGTTCGAGGGAACCGGCATCGGGCTGGCCACGGTGCGCCGGGTGGTGGAACGGCACGGCGGGC
GGGCCTGGGCCGAAGGGACAATCGGCGCCGGCGCCACCTTTTACTTTACCCTGGGAGAATCTCACCGCCTTGCGGAGGGC
GACGAAGGATAA

Upstream 100 bases:

>100_bases
CGGCTTCATCTGGGCCGAGAGCGAGCCTGACAGGGGGAGCACCTTCCGGATGCTTTTTCCGCTGGGGACCGACTGACCAC
TGAGCGAGGGAACTTCGCCC

Downstream 100 bases:

>100_bases
GCGATGGACGATTTGCACCTGAGGATACTGCTGGCGGAGGACTCCGAGGAGGATGCCTTTCTGCTTCTGCGGGAGCTGGA
ACGGGGGGGATACACGGTGG

Product: PAS/PAC sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 483; Mature: 483

Protein sequence:

>483_residues
MKLPYHTMPFRIAAYYALCAGLWILLSDRLLGVAVRDPDLITSLETAKGWLFVAVTALLLHVVVRRFVDEVMRREELLRE
RNEELCMVEEELRQQLDESERAQQELRESEENYRLLFSSNPHPMCVFDLETLAFLEVNGSAIQHYGYSREEFLAMTIKDI
RPPEDVPSLMAIVKRVDSGPDRVGVWRHRKKDGTIISVEITSHMIDFAGRRAKVILCNDVTERIRAKEEILRLNAELEQR
VRQRTAELEQANREMESFSYSVSHDLRAPLRHIDGFSRVLLEDCGDQLNQEGKGYLTRICAAANRMGQLIDDLLQLASVS
RSELQRRPVDFSNLARTIALELKQTDPEREVTFTIAGGVSAQGDPVLLRVVLENLLGNAWKYTGKNHRTAIEFGAVEGEE
GRVYFVRDNGVGFDMTYVGKLFTPFQRLHAMDEFEGTGIGLATVRRVVERHGGRAWAEGTIGAGATFYFTLGESHRLAEG
DEG

Sequences:

>Translated_483_residues
MKLPYHTMPFRIAAYYALCAGLWILLSDRLLGVAVRDPDLITSLETAKGWLFVAVTALLLHVVVRRFVDEVMRREELLRE
RNEELCMVEEELRQQLDESERAQQELRESEENYRLLFSSNPHPMCVFDLETLAFLEVNGSAIQHYGYSREEFLAMTIKDI
RPPEDVPSLMAIVKRVDSGPDRVGVWRHRKKDGTIISVEITSHMIDFAGRRAKVILCNDVTERIRAKEEILRLNAELEQR
VRQRTAELEQANREMESFSYSVSHDLRAPLRHIDGFSRVLLEDCGDQLNQEGKGYLTRICAAANRMGQLIDDLLQLASVS
RSELQRRPVDFSNLARTIALELKQTDPEREVTFTIAGGVSAQGDPVLLRVVLENLLGNAWKYTGKNHRTAIEFGAVEGEE
GRVYFVRDNGVGFDMTYVGKLFTPFQRLHAMDEFEGTGIGLATVRRVVERHGGRAWAEGTIGAGATFYFTLGESHRLAEG
DEG
>Mature_483_residues
MKLPYHTMPFRIAAYYALCAGLWILLSDRLLGVAVRDPDLITSLETAKGWLFVAVTALLLHVVVRRFVDEVMRREELLRE
RNEELCMVEEELRQQLDESERAQQELRESEENYRLLFSSNPHPMCVFDLETLAFLEVNGSAIQHYGYSREEFLAMTIKDI
RPPEDVPSLMAIVKRVDSGPDRVGVWRHRKKDGTIISVEITSHMIDFAGRRAKVILCNDVTERIRAKEEILRLNAELEQR
VRQRTAELEQANREMESFSYSVSHDLRAPLRHIDGFSRVLLEDCGDQLNQEGKGYLTRICAAANRMGQLIDDLLQLASVS
RSELQRRPVDFSNLARTIALELKQTDPEREVTFTIAGGVSAQGDPVLLRVVLENLLGNAWKYTGKNHRTAIEFGAVEGEE
GRVYFVRDNGVGFDMTYVGKLFTPFQRLHAMDEFEGTGIGLATVRRVVERHGGRAWAEGTIGAGATFYFTLGESHRLAEG
DEG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=419, Percent_Identity=25.7756563245823, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1789149, Length=231, Percent_Identity=28.1385281385281, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1790436, Length=220, Percent_Identity=30, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1786600, Length=233, Percent_Identity=29.1845493562232, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI145693157, Length=299, Percent_Identity=26.0869565217391, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1788549, Length=213, Percent_Identity=27.2300469483568, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081816, Length=252, Percent_Identity=29.3650793650794, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1790551, Length=213, Percent_Identity=25.8215962441315, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790346, Length=229, Percent_Identity=28.3842794759825, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1786783, Length=263, Percent_Identity=24.7148288973384, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1786912, Length=238, Percent_Identity=27.3109243697479, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 54844; Mature: 54844

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS50112 PAS ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLPYHTMPFRIAAYYALCAGLWILLSDRLLGVAVRDPDLITSLETAKGWLFVAVTALLL
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHEEEECCCHHHHHHHHHCCHHHHHHHHHHH
HVVVRRFVDEVMRREELLRERNEELCMVEEELRQQLDESERAQQELRESEENYRLLFSSN
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCEEEEECCC
PHPMCVFDLETLAFLEVNGSAIQHYGYSREEFLAMTIKDIRPPEDVPSLMAIVKRVDSGP
CCCEEEEECCEEEEEEECCCHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
DRVGVWRHRKKDGTIISVEITSHMIDFAGRRAKVILCNDVTERIRAKEEILRLNAELEQR
CCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHH
VRQRTAELEQANREMESFSYSVSHDLRAPLRHIDGFSRVLLEDCGDQLNQEGKGYLTRIC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHH
AAANRMGQLIDDLLQLASVSRSELQRRPVDFSNLARTIALELKQTDPEREVTFTIAGGVS
HHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
AQGDPVLLRVVLENLLGNAWKYTGKNHRTAIEFGAVEGEEGRVYFVRDNGVGFDMTYVGK
CCCCHHHHHHHHHHHHCCCEECCCCCCCEEEEECCEECCCCEEEEEECCCCCCCHHHHHH
LFTPFQRLHAMDEFEGTGIGLATVRRVVERHGGRAWAEGTIGAGATFYFTLGESHRLAEG
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCEEEEEEECCCCCCCCC
DEG
CCC
>Mature Secondary Structure
MKLPYHTMPFRIAAYYALCAGLWILLSDRLLGVAVRDPDLITSLETAKGWLFVAVTALLL
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHEEEECCCHHHHHHHHHCCHHHHHHHHHHH
HVVVRRFVDEVMRREELLRERNEELCMVEEELRQQLDESERAQQELRESEENYRLLFSSN
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCEEEEECCC
PHPMCVFDLETLAFLEVNGSAIQHYGYSREEFLAMTIKDIRPPEDVPSLMAIVKRVDSGP
CCCEEEEECCEEEEEEECCCHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
DRVGVWRHRKKDGTIISVEITSHMIDFAGRRAKVILCNDVTERIRAKEEILRLNAELEQR
CCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHH
VRQRTAELEQANREMESFSYSVSHDLRAPLRHIDGFSRVLLEDCGDQLNQEGKGYLTRIC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHH
AAANRMGQLIDDLLQLASVSRSELQRRPVDFSNLARTIALELKQTDPEREVTFTIAGGVS
HHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
AQGDPVLLRVVLENLLGNAWKYTGKNHRTAIEFGAVEGEEGRVYFVRDNGVGFDMTYVGK
CCCCHHHHHHHHHHHHCCCEECCCCCCCEEEEECCEECCCCEEEEEECCCCCCCHHHHHH
LFTPFQRLHAMDEFEGTGIGLATVRRVVERHGGRAWAEGTIGAGATFYFTLGESHRLAEG
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCEEEEEEECCCCCCCCC
DEG
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]