Click here to switch to the map view.

The map label for this gene is ybbD [H]

Identifier: 78189925

GI number: 78189925

Start: 2503979

End: 2505103

Strand: Reverse

Name: ybbD [H]

Synonym: Cag_1972

Alternate gene names: 78189925

Gene position: 2505103-2503979 (Counterclockwise)

Preceding gene: 78189926

Following gene: 78189924

Centisome position: 97.4

GC content: 49.33

Gene sequence:

>1125_bases
ATGAGACGGCGTTTGCGGATGGTTGCGTTGGTGCTGCTATGGCTTTGCATGGCAGCACCTCTCGCTATGGCGGCAGCTTC
GCCCGATAGCCTTTCCATAAAAATGGGGCAAATGGTGATGGTTGGCTTTCGTGGCACCTCGCTTGCAGAGTCGCCCCAAA
TTGTTGCTGCTATTCAAAAGCGCCACATTGGCGGCGTGGTGCTTTTTGACTACGATGTTCCCTTTGCCTCCCCTACTCGC
AACATTACAAGTCCCTCGCAACTTGCTCGTTTAACGCAAGAGTTGCAAGAGCATTCAGCAATTCCACTCTTTATTGCTAT
TGATCAAGAAGGGGGAAAGGTCAACCGTCTTAAAGCCTCACGCGGTTTTCCCGTAACAATATCAGCCGCAAAGTTAGGAG
CCTTAAACCAGCCCGACTCGACCCGATCCGCTGCTCGTCAAATAGCAAAAACGCTCAGGGCAATGCACGTTAACATGAAT
TTTGCGCCCGTTGCCGATCTCAATCGTAATCCCAATAATCCCGTTATTGGCAAGGTAGAGCGAAGCTTCTCAGCCGATGC
TGCACGAGCCACCACCCATATTCGCTTAACGGCTGATACCTATCGTGCGGAAGGCATTATTCCGACGCTCAAGCATTTTC
CGGGACATGGCAGCTCCACCACCGATACCCATCTTGATTTTACCGATGTAAGTAATTCGTGGAGCAAGGAAGAGCTGGAA
CCGTATCGCTCCTTAATTGCCGACGGCTATGAGGATGCTATTATGACGGCGCATGTTTTTAATGCTACGCTTGACCCAAC
CTATCCCGCCACGCTTTCAAAGCCAACGCTTGATGGGGTGTTGCGCCAACAGTTAGGCTTTAAGGGAGTTATTATTAGCG
ATGATATGCAGATGGGAGCTATTGCAGCGCACTATGGGCTTGAAAGTGCTATTCGCCTTGCTCTCAACGCTGGAGTTGAT
ATTCTTTTGTTTGGCAACAATACCGCTTACGATGAAGCTATTGCCGAAAAAGCTCTTGCAATTATTCATGCACTTATTGA
ACGTGGAGAAATTCAGCCAAGCCGTATTGAAGAATCGTATCGCCGCATTATGGCACTAAAGCAGAGGTATGGGGTGGTGA
GGTAA

Upstream 100 bases:

>100_bases
CCAATAAGCTCTCTGAGTTGATTTTATCGGGAGCCGTACAAGAGGGCGAAAGCGTTGCGGTGGAGTGCGTTGGCGACGAA
TTAGTGGTTCGCAAAAACGC

Downstream 100 bases:

>100_bases
AAGAAGGGTGTTACATTGGTGCAGAAGTAAGCAGCGAATTTGGTTAAAGAGCGAATCCCATTTTTTCTATGAATAAAAAA
ACGTGGCAAGGAATCTTCCT

Product: glycosyl hydrolase family protein

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MRRRLRMVALVLLWLCMAAPLAMAAASPDSLSIKMGQMVMVGFRGTSLAESPQIVAAIQKRHIGGVVLFDYDVPFASPTR
NITSPSQLARLTQELQEHSAIPLFIAIDQEGGKVNRLKASRGFPVTISAAKLGALNQPDSTRSAARQIAKTLRAMHVNMN
FAPVADLNRNPNNPVIGKVERSFSADAARATTHIRLTADTYRAEGIIPTLKHFPGHGSSTTDTHLDFTDVSNSWSKEELE
PYRSLIADGYEDAIMTAHVFNATLDPTYPATLSKPTLDGVLRQQLGFKGVIISDDMQMGAIAAHYGLESAIRLALNAGVD
ILLFGNNTAYDEAIAEKALAIIHALIERGEIQPSRIEESYRRIMALKQRYGVVR

Sequences:

>Translated_374_residues
MRRRLRMVALVLLWLCMAAPLAMAAASPDSLSIKMGQMVMVGFRGTSLAESPQIVAAIQKRHIGGVVLFDYDVPFASPTR
NITSPSQLARLTQELQEHSAIPLFIAIDQEGGKVNRLKASRGFPVTISAAKLGALNQPDSTRSAARQIAKTLRAMHVNMN
FAPVADLNRNPNNPVIGKVERSFSADAARATTHIRLTADTYRAEGIIPTLKHFPGHGSSTTDTHLDFTDVSNSWSKEELE
PYRSLIADGYEDAIMTAHVFNATLDPTYPATLSKPTLDGVLRQQLGFKGVIISDDMQMGAIAAHYGLESAIRLALNAGVD
ILLFGNNTAYDEAIAEKALAIIHALIERGEIQPSRIEESYRRIMALKQRYGVVR
>Mature_374_residues
MRRRLRMVALVLLWLCMAAPLAMAAASPDSLSIKMGQMVMVGFRGTSLAESPQIVAAIQKRHIGGVVLFDYDVPFASPTR
NITSPSQLARLTQELQEHSAIPLFIAIDQEGGKVNRLKASRGFPVTISAAKLGALNQPDSTRSAARQIAKTLRAMHVNMN
FAPVADLNRNPNNPVIGKVERSFSADAARATTHIRLTADTYRAEGIIPTLKHFPGHGSSTTDTHLDFTDVSNSWSKEELE
PYRSLIADGYEDAIMTAHVFNATLDPTYPATLSKPTLDGVLRQQLGFKGVIISDDMQMGAIAAHYGLESAIRLALNAGVD
ILLFGNNTAYDEAIAEKALAIIHALIERGEIQPSRIEESYRRIMALKQRYGVVR

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=299, Percent_Identity=34.7826086956522, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1788453, Length=282, Percent_Identity=23.4042553191489, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 40844; Mature: 40844

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRRLRMVALVLLWLCMAAPLAMAAASPDSLSIKMGQMVMVGFRGTSLAESPQIVAAIQK
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHHH
RHIGGVVLFDYDVPFASPTRNITSPSQLARLTQELQEHSAIPLFIAIDQEGGKVNRLKAS
HCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECC
RGFPVTISAAKLGALNQPDSTRSAARQIAKTLRAMHVNMNFAPVADLNRNPNNPVIGKVE
CCCCEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECHH
RSFSADAARATTHIRLTADTYRAEGIIPTLKHFPGHGSSTTDTHLDFTDVSNSWSKEELE
HCCCCCHHHCEEEEEEEECCHHCCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHH
PYRSLIADGYEDAIMTAHVFNATLDPTYPATLSKPTLDGVLRQQLGFKGVIISDDMQMGA
HHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCHHH
IAAHYGLESAIRLALNAGVDILLFGNNTAYDEAIAEKALAIIHALIERGEIQPSRIEESY
HHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RRIMALKQRYGVVR
HHHHHHHHHHCCCC
>Mature Secondary Structure
MRRRLRMVALVLLWLCMAAPLAMAAASPDSLSIKMGQMVMVGFRGTSLAESPQIVAAIQK
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHHH
RHIGGVVLFDYDVPFASPTRNITSPSQLARLTQELQEHSAIPLFIAIDQEGGKVNRLKAS
HCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECC
RGFPVTISAAKLGALNQPDSTRSAARQIAKTLRAMHVNMNFAPVADLNRNPNNPVIGKVE
CCCCEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECHH
RSFSADAARATTHIRLTADTYRAEGIIPTLKHFPGHGSSTTDTHLDFTDVSNSWSKEELE
HCCCCCHHHCEEEEEEEECCHHCCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHH
PYRSLIADGYEDAIMTAHVFNATLDPTYPATLSKPTLDGVLRQQLGFKGVIISDDMQMGA
HHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCHHH
IAAHYGLESAIRLALNAGVDILLFGNNTAYDEAIAEKALAIIHALIERGEIQPSRIEESY
HHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RRIMALKQRYGVVR
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]