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The map label for this gene is yrkF [H]

Identifier: 78189912

GI number: 78189912

Start: 2488607

End: 2488918

Strand: Reverse

Name: yrkF [H]

Synonym: Cag_1959

Alternate gene names: 78189912

Gene position: 2488918-2488607 (Counterclockwise)

Preceding gene: 78189913

Following gene: 78189911

Centisome position: 96.77

GC content: 41.35

Gene sequence:

>312_bases
TTGCGCCAAAACGGTAGCTTACAGCTTCGGCGCTCATTAATTTCTTCCCTAACATTTTATTTGAGGAGTGTTGTTATGAG
TGATGTAACCCCAAAAGTTGAGTTGAATTGTGAAGGTCTTAATTGCCCTCTTCCAATTCTGAAAACCAAAAAAGCAATGG
ATTCATTGAGTGTTGGTGATGTGCTACAAGTGAGCACCACTGATCCTGGCTCAGTAAACGATATGGATTCATGGGCAAAG
CGTACTGGTAATGAGTTGGTTTCTCATACAGAAGCTGCTGGTGTGCATACCTTTTTATTGCGCAAACAGTAA

Upstream 100 bases:

>100_bases
TGGAATGATTATGAAGAGCCTCTCTCGACAAGCGCTGGAGCTATTGTTGACCCTCAATATGCCGACGATTATTTTGTTTC
CAAACTACGCCCCGAGCAGT

Downstream 100 bases:

>100_bases
TGGTTGTTGGTGTCGGAGAGTTATCCGTGGTGATTGCTCTCCGACTTTTGTTTTTTGCTCAATTGGGAATAACCGTGATC
GGCTAAAGAATGGAGATGGT

Product: redox protein regulator of disulfide bond formation-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MRQNGSLQLRRSLISSLTFYLRSVVMSDVTPKVELNCEGLNCPLPILKTKKAMDSLSVGDVLQVSTTDPGSVNDMDSWAK
RTGNELVSHTEAAGVHTFLLRKQ

Sequences:

>Translated_103_residues
MRQNGSLQLRRSLISSLTFYLRSVVMSDVTPKVELNCEGLNCPLPILKTKKAMDSLSVGDVLQVSTTDPGSVNDMDSWAK
RTGNELVSHTEAAGVHTFLLRKQ
>Mature_103_residues
MRQNGSLQLRRSLISSLTFYLRSVVMSDVTPKVELNCEGLNCPLPILKTKKAMDSLSVGDVLQVSTTDPGSVNDMDSWAK
RTGNELVSHTEAAGVHTFLLRKQ

Specific function: Unknown

COG id: COG0425

COG function: function code O; Predicted redox protein, regulator of disulfide bond formation

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001763
- InterPro:   IPR001455 [H]

Pfam domain/function: PF00581 Rhodanese; PF01206 SirA [H]

EC number: NA

Molecular weight: Translated: 11334; Mature: 11334

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: PS01148 UPF0033

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQNGSLQLRRSLISSLTFYLRSVVMSDVTPKVELNCEGLNCPLPILKTKKAMDSLSVGD
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCC
VLQVSTTDPGSVNDMDSWAKRTGNELVSHTEAAGVHTFLLRKQ
EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHEEECC
>Mature Secondary Structure
MRQNGSLQLRRSLISSLTFYLRSVVMSDVTPKVELNCEGLNCPLPILKTKKAMDSLSVGD
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCC
VLQVSTTDPGSVNDMDSWAKRTGNELVSHTEAAGVHTFLLRKQ
EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]