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The map label for this gene is ycfF [C]

Identifier: 78189884

GI number: 78189884

Start: 2463146

End: 2463511

Strand: Reverse

Name: ycfF [C]

Synonym: Cag_1931

Alternate gene names: 78189884

Gene position: 2463511-2463146 (Counterclockwise)

Preceding gene: 78189885

Following gene: 78189883

Centisome position: 95.78

GC content: 51.91

Gene sequence:

>366_bases
ATGAGCCACAATCAAGAACAAGATTGCCTTTTCTGCCGCATTGTGCGGGGTGAAATTCCTGCAACCATTGTGTATCGTAA
CGAACACGTTGTAGCGTTTAAGGATATTAGCCCAACGGCACCACACCACGTCCTTATTATTCCCGTGCAGCACGTTGCTT
CGCTTAACGCCCTTTCGCCCGAGCATGAAGCGGTGGCAGGGCAGCTTTTGCTTGCGGCAGCACCTGTAGCCGAAGCGCTT
GGCATTAAAGAGTCGGGCTATCGCTTTGTTATTAACACAGGCGCTGATGCCATGCAAACCGTATTCCACATTCATGCGCA
TCTCATTGGTGGGCAGGCGATGGGTTGGCCTCCGTTTCCCGTATAA

Upstream 100 bases:

>100_bases
AAGAGGAAAAGCCGCCCGTCAAATCAGACGATAATGCGGCTTTGTGTTCCATACGCCCAACGCCGTAAAGAGATGATACC
TTAACATATCCACCAAAACT

Downstream 100 bases:

>100_bases
TGTAACTATCAAAAATAGAAAGAGTTAACCATTTTAAGTATGAGCGGGCATGGCGGCTTTGTTTACTCAATAGAGCCTCC
ATGCACTTTTTTTCTTTTCT

Product: Hit family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MSHNQEQDCLFCRIVRGEIPATIVYRNEHVVAFKDISPTAPHHVLIIPVQHVASLNALSPEHEAVAGQLLLAAAPVAEAL
GIKESGYRFVINTGADAMQTVFHIHAHLIGGQAMGWPPFPV

Sequences:

>Translated_121_residues
MSHNQEQDCLFCRIVRGEIPATIVYRNEHVVAFKDISPTAPHHVLIIPVQHVASLNALSPEHEAVAGQLLLAAAPVAEAL
GIKESGYRFVINTGADAMQTVFHIHAHLIGGQAMGWPPFPV
>Mature_120_residues
SHNQEQDCLFCRIVRGEIPATIVYRNEHVVAFKDISPTAPHHVLIIPVQHVASLNALSPEHEAVAGQLLLAAAPVAEALG
IKESGYRFVINTGADAMQTVFHIHAHLIGGQAMGWPPFPV

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI4885413, Length=111, Percent_Identity=41.4414414414414, Blast_Score=111, Evalue=1e-25,
Organism=Homo sapiens, GI14211923, Length=110, Percent_Identity=38.1818181818182, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1787346, Length=109, Percent_Identity=46.7889908256881, Blast_Score=104, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17506713, Length=114, Percent_Identity=42.9824561403509, Blast_Score=111, Evalue=7e-26,
Organism=Saccharomyces cerevisiae, GI6320078, Length=117, Percent_Identity=37.6068376068376, Blast_Score=73, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28574010, Length=112, Percent_Identity=40.1785714285714, Blast_Score=100, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24581222, Length=112, Percent_Identity=40.1785714285714, Blast_Score=100, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 13103; Mature: 12972

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHNQEQDCLFCRIVRGEIPATIVYRNEHVVAFKDISPTAPHHVLIIPVQHVASLNALSP
CCCCCCCCEEEEEEECCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEHHHHHCCCCCCC
EHEAVAGQLLLAAAPVAEALGIKESGYRFVINTGADAMQTVFHIHAHLIGGQAMGWPPFP
CCHHHHHHHHHHHCCHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCC
V
C
>Mature Secondary Structure 
SHNQEQDCLFCRIVRGEIPATIVYRNEHVVAFKDISPTAPHHVLIIPVQHVASLNALSP
CCCCCCCEEEEEEECCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEHHHHHCCCCCCC
EHEAVAGQLLLAAAPVAEALGIKESGYRFVINTGADAMQTVFHIHAHLIGGQAMGWPPFP
CCHHHHHHHHHHHCCHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCC
V
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]