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The map label for this gene is secY

Identifier: 78189787

GI number: 78189787

Start: 2349286

End: 2350617

Strand: Reverse

Name: secY

Synonym: Cag_1831

Alternate gene names: 78189787

Gene position: 2350617-2349286 (Counterclockwise)

Preceding gene: 78189788

Following gene: 78189786

Centisome position: 91.39

GC content: 40.92

Gene sequence:

>1332_bases
ATGAAGCTTACGGACAGTATAAAGAATATCAATAAAATCCCTGAGCTTCGTCAGCGGATTCTTTATACCCTTCTTCTTTT
ATTTATCTACCGAATTGGTTCTCACATTACCATTCCAGGAGTAGATGCTCTTGCGGTTTCAACTGCATCGCAATCACATG
CAAATGATTTATTTGGTCTTTTTGATCTCTTTGTAGGTGGTGCATTTGCAAGAGCATCTATCTTCTCTCTCGGTATTATG
CCTTACATTTCAGCCTCCATTATTGTTCAACTTTTAGGTGCGGTTACTCCGTACTTTCAAAAATTGCAAAAAGAGGGTGA
AGATGGGCGTCAAAAAATTAATCAATTGACGCGCATGGGTACGGTACTTATTGCTATCCTTCAAGCATGGGGGGTTAGTG
TAAGTCTTGCTAGTCCAGCCTCTTTTGGTAAGGTTATTGTGCCCGATCCTGGATTTTTATTTATTGTTACCACCATATTA
ATTCTGACGGCATCAACCATGTTTGTTATGTGGCTTGGTGAGCGTATTACCGAGAGAGGTATAGGGAACGGAATATCACT
CATTATTATGATTGGTATTCTTGCTCGTTTTCCTCAAGCTGTTGTTGCTGAGTTTCAGTCGGTATCACTTGGTAGTAAGA
ATTGGATTATTGAGATTATTATTTTAGCGCTCATGGGTGCAATTGTTGCCAGCGTTATTTTTTTGACGGTAGGCACTCGA
CGCATACCTGTGCAACATGCTAAGCGAGTGGTTGGGCGTAAAGTGTATGGAGGTAATACGCAGTATATTCCAATGCGTAT
TAATACAGCTGGTGTTATGCCTATTATTTTTGCTCAGTCCATTATGTTTTTGCCTGCAACATTTCTCTCTTTTTTCCCTG
AAAATGAAATGATGCAAAGTATTGCTGGTGCATTTGCTTATGACTCATGGTGGTACGCGCTGATTTTTGGTGCTATGATT
GTATTCTTCACCTATTTTTATACAGCGCTTGCATTTAATCCAAAGGATGTTGCCGATACCATGCGCCGTCAAGGTGGATT
TATTCCTGGTGTTCGTCCTGGTAAAAGTACCGCTGAGTTTATAGAGAATATTTTAACACGTATCACCTTACCCGGTGCAA
TATCACTTGCGCTTATTGCGGTGTTGCCAACGTTTCTAACAAAGTTTGCTAATGTAACGCCGGGGTTTGCCCAATTTTTT
GGCGGAACAAGTTTACTTATTATTGTCGGCGTTGGTCTTGATACGTTACAGCAAGTTGAAAGCCATCTCTTAATGCGCCA
TTACGATGGTTTTATGAAGTCGGGGAAAACCCGTGGTCGTCAAGGGAGATAG

Upstream 100 bases:

>100_bases
CTATAGAAGAGGCTCTTCTTAAAGAAAAAGTTAAGCTTGTTAAGGTGAAAAAGGCTAAGCCTACCGCCTAACAGAAGCTA
ATCTTTTTACGCTTTTTATT

Downstream 100 bases:

>100_bases
TACACTTCATGATTACCATTAAAAGCGACCGTGAAATTGAGCTAATGCGCGAAGCAGGTGCTTTAGTTTCGCAAGTACTT
GACCTGATAGAGCATACGGT

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MKLTDSIKNINKIPELRQRILYTLLLLFIYRIGSHITIPGVDALAVSTASQSHANDLFGLFDLFVGGAFARASIFSLGIM
PYISASIIVQLLGAVTPYFQKLQKEGEDGRQKINQLTRMGTVLIAILQAWGVSVSLASPASFGKVIVPDPGFLFIVTTIL
ILTASTMFVMWLGERITERGIGNGISLIIMIGILARFPQAVVAEFQSVSLGSKNWIIEIIILALMGAIVASVIFLTVGTR
RIPVQHAKRVVGRKVYGGNTQYIPMRINTAGVMPIIFAQSIMFLPATFLSFFPENEMMQSIAGAFAYDSWWYALIFGAMI
VFFTYFYTALAFNPKDVADTMRRQGGFIPGVRPGKSTAEFIENILTRITLPGAISLALIAVLPTFLTKFANVTPGFAQFF
GGTSLLIIVGVGLDTLQQVESHLLMRHYDGFMKSGKTRGRQGR

Sequences:

>Translated_443_residues
MKLTDSIKNINKIPELRQRILYTLLLLFIYRIGSHITIPGVDALAVSTASQSHANDLFGLFDLFVGGAFARASIFSLGIM
PYISASIIVQLLGAVTPYFQKLQKEGEDGRQKINQLTRMGTVLIAILQAWGVSVSLASPASFGKVIVPDPGFLFIVTTIL
ILTASTMFVMWLGERITERGIGNGISLIIMIGILARFPQAVVAEFQSVSLGSKNWIIEIIILALMGAIVASVIFLTVGTR
RIPVQHAKRVVGRKVYGGNTQYIPMRINTAGVMPIIFAQSIMFLPATFLSFFPENEMMQSIAGAFAYDSWWYALIFGAMI
VFFTYFYTALAFNPKDVADTMRRQGGFIPGVRPGKSTAEFIENILTRITLPGAISLALIAVLPTFLTKFANVTPGFAQFF
GGTSLLIIVGVGLDTLQQVESHLLMRHYDGFMKSGKTRGRQGR
>Mature_443_residues
MKLTDSIKNINKIPELRQRILYTLLLLFIYRIGSHITIPGVDALAVSTASQSHANDLFGLFDLFVGGAFARASIFSLGIM
PYISASIIVQLLGAVTPYFQKLQKEGEDGRQKINQLTRMGTVLIAILQAWGVSVSLASPASFGKVIVPDPGFLFIVTTIL
ILTASTMFVMWLGERITERGIGNGISLIIMIGILARFPQAVVAEFQSVSLGSKNWIIEIIILALMGAIVASVIFLTVGTR
RIPVQHAKRVVGRKVYGGNTQYIPMRINTAGVMPIIFAQSIMFLPATFLSFFPENEMMQSIAGAFAYDSWWYALIFGAMI
VFFTYFYTALAFNPKDVADTMRRQGGFIPGVRPGKSTAEFIENILTRITLPGAISLALIAVLPTFLTKFANVTPGFAQFF
GGTSLLIIVGVGLDTLQQVESHLLMRHYDGFMKSGKTRGRQGR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=429, Percent_Identity=42.1911421911422, Blast_Score=315, Evalue=3e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 48556; Mature: 48556

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTDSIKNINKIPELRQRILYTLLLLFIYRIGSHITIPGVDALAVSTASQSHANDLFGL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHH
FDLFVGGAFARASIFSLGIMPYISASIIVQLLGAVTPYFQKLQKEGEDGRQKINQLTRMG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
TVLIAILQAWGVSVSLASPASFGKVIVPDPGFLFIVTTILILTASTMFVMWLGERITERG
HHHHHHHHHHCCEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IGNGISLIIMIGILARFPQAVVAEFQSVSLGSKNWIIEIIILALMGAIVASVIFLTVGTR
CCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
RIPVQHAKRVVGRKVYGGNTQYIPMRINTAGVMPIIFAQSIMFLPATFLSFFPENEMMQS
CCCHHHHHHHHCCCEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IAGAFAYDSWWYALIFGAMIVFFTYFYTALAFNPKDVADTMRRQGGFIPGVRPGKSTAEF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHH
IENILTRITLPGAISLALIAVLPTFLTKFANVTPGFAQFFGGTSLLIIVGVGLDTLQQVE
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEEEECCHHHHHHHH
SHLLMRHYDGFMKSGKTRGRQGR
HHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKLTDSIKNINKIPELRQRILYTLLLLFIYRIGSHITIPGVDALAVSTASQSHANDLFGL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHH
FDLFVGGAFARASIFSLGIMPYISASIIVQLLGAVTPYFQKLQKEGEDGRQKINQLTRMG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
TVLIAILQAWGVSVSLASPASFGKVIVPDPGFLFIVTTILILTASTMFVMWLGERITERG
HHHHHHHHHHCCEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IGNGISLIIMIGILARFPQAVVAEFQSVSLGSKNWIIEIIILALMGAIVASVIFLTVGTR
CCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
RIPVQHAKRVVGRKVYGGNTQYIPMRINTAGVMPIIFAQSIMFLPATFLSFFPENEMMQS
CCCHHHHHHHHCCCEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IAGAFAYDSWWYALIFGAMIVFFTYFYTALAFNPKDVADTMRRQGGFIPGVRPGKSTAEF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHH
IENILTRITLPGAISLALIAVLPTFLTKFANVTPGFAQFFGGTSLLIIVGVGLDTLQQVE
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEEEECCHHHHHHHH
SHLLMRHYDGFMKSGKTRGRQGR
HHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]