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The map label for this gene is infA

Identifier: 78189785

GI number: 78189785

Start: 2348223

End: 2348441

Strand: Reverse

Name: infA

Synonym: Cag_1829

Alternate gene names: 78189785

Gene position: 2348441-2348223 (Counterclockwise)

Preceding gene: 78189786

Following gene: 78189784

Centisome position: 91.31

GC content: 36.99

Gene sequence:

>219_bases
TTGGCGAAAGAAGAATCTATTGAAATTGAAGGTGTTATTGTTGATGCCTTGCCTAATGCCCAATTCAAGGTTAAGCTTGA
AAATGGCTTAGAAGTATTGGCGCATGTATCAGGAAAAATTCGGATGCACTATATTAGAATTCTCCCTGGTGATAAAGTTA
AGGTTCAAATTTCACCGTACGATATTACGAAAGGTCGCATTACGTACCGTTACAAATAA

Upstream 100 bases:

>100_bases
TTGTTCGTCCAAAGAAAGCTGAAATTTTAACGATCAGTAAAAATTAAGCGGCATCTTATTAGCTGCCATGTATAAGTAGT
TGTAAACGAGGAGAAAGACG

Downstream 100 bases:

>100_bases
GTAAACAAAACCGAAGCTTGGAGCTTTGTTTTTGTTTTTAATTTTTTTACATTGTCAGCCTTTTCACGTTTTCGTGAGTT
GGCTTAACCATTGCTTGATA

Product: translation initiation factor IF-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 71

Protein sequence:

>72_residues
MAKEESIEIEGVIVDALPNAQFKVKLENGLEVLAHVSGKIRMHYIRILPGDKVKVQISPYDITKGRITYRYK

Sequences:

>Translated_72_residues
MAKEESIEIEGVIVDALPNAQFKVKLENGLEVLAHVSGKIRMHYIRILPGDKVKVQISPYDITKGRITYRYK
>Mature_71_residues
AKEESIEIEGVIVDALPNAQFKVKLENGLEVLAHVSGKIRMHYIRILPGDKVKVQISPYDITKGRITYRYK

Specific function: No specific function has so far been attributed to this initiation factor; however, it seems to stimulate more or less all the activities of the other two initiation factors, IF-2 and IF-3

COG id: COG0361

COG function: function code J; Translation initiation factor 1 (IF-1)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1-like domain

Homologues:

Organism=Escherichia coli, GI1787110, Length=72, Percent_Identity=56.9444444444444, Blast_Score=97, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IF1_CHLCH (Q3APJ5)

Other databases:

- EMBL:   CP000108
- RefSeq:   YP_380123.1
- ProteinModelPortal:   Q3APJ5
- SMR:   Q3APJ5
- STRING:   Q3APJ5
- GeneID:   3746460
- GenomeReviews:   CP000108_GR
- KEGG:   cch:Cag_1829
- eggNOG:   COG0361
- HOGENOM:   HBG286099
- OMA:   KMRMHFI
- ProtClustDB:   PRK00276
- BioCyc:   CCHL340177:CAG_1829-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00075
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR022967
- InterPro:   IPR006196
- InterPro:   IPR004368
- Gene3D:   G3DSA:2.40.50.140
- SMART:   SM00316
- TIGRFAMs:   TIGR00008

Pfam domain/function: PF01176 eIF-1a; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 8212; Mature: 8081

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS50832 S1_IF1_TYPE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEESIEIEGVIVDALPNAQFKVKLENGLEVLAHVSGKIRMHYIRILPGDKVKVQISPY
CCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCEEEEEEEEECCCCEEEEEECCC
DITKGRITYRYK
CCCCCEEEEEEC
>Mature Secondary Structure 
AKEESIEIEGVIVDALPNAQFKVKLENGLEVLAHVSGKIRMHYIRILPGDKVKVQISPY
CCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCEEEEEEEEECCCCEEEEEECCC
DITKGRITYRYK
CCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA