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The map label for this gene is rpsU

Identifier: 78189590

GI number: 78189590

Start: 2131184

End: 2131381

Strand: Reverse

Name: rpsU

Synonym: Cag_1632

Alternate gene names: 78189590

Gene position: 2131381-2131184 (Counterclockwise)

Preceding gene: 78189591

Following gene: 78189589

Centisome position: 82.87

GC content: 43.94

Gene sequence:

>198_bases
TTGGTCAGCGTTCAAATCAACGATAACGAAACCATAGACAAAATGCTGAAGCGCTTTAAGAAAAAGTACGAGCGTGCAGG
TGTTTTAAAAGAGTATCGTGCTAACGCATACTTCGTAAAACCTTCAATTGATAACCGCCTGAAGCGTTCTCGCAGCCGCA
GAAGAGCACAGCGTGCAAACGAAGAGCGTAACTCTTAA

Upstream 100 bases:

>100_bases
AGATTAAAGCATCGCTAAAAATCTATTGTGCAAGGTGTTTACAATAATTTTTAAACATGCCTACGAGTTTTTATTATCAC
ACTAAAGGGGGTGAATGTAA

Downstream 100 bases:

>100_bases
GCTGGTTTTTACTTTTGATTCTATCTCTAAAAAAAGCAACTTTGTTATGAGGTTGCTTTTTTTATTAACTCATAGTTTTT
CAACCCATGCGAGTTTTTCG

Product: 30S ribosomal protein S21

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MVSVQINDNETIDKMLKRFKKKYERAGVLKEYRANAYFVKPSIDNRLKRSRSRRRAQRANEERNS

Sequences:

>Translated_65_residues
MVSVQINDNETIDKMLKRFKKKYERAGVLKEYRANAYFVKPSIDNRLKRSRSRRRAQRANEERNS
>Mature_65_residues
MVSVQINDNETIDKMLKRFKKKYERAGVLKEYRANAYFVKPSIDNRLKRSRSRRRAQRANEERNS

Specific function: Unknown

COG id: COG0828

COG function: function code J; Ribosomal protein S21

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S21P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS21_CHLCH (Q3AQ40)

Other databases:

- EMBL:   CP000108
- RefSeq:   YP_379928.1
- ProteinModelPortal:   Q3AQ40
- SMR:   Q3AQ40
- STRING:   Q3AQ40
- GeneID:   3747940
- GenomeReviews:   CP000108_GR
- KEGG:   cch:Cag_1632
- eggNOG:   NOG87974
- HOGENOM:   HBG708268
- OMA:   AYFVKPS
- ProtClustDB:   PRK00270
- BioCyc:   CCHL340177:CAG_1632-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00358
- InterPro:   IPR001911
- PRINTS:   PR00976
- ProDom:   PD005521
- TIGRFAMs:   TIGR00030

Pfam domain/function: PF01165 Ribosomal_S21

EC number: NA

Molecular weight: Translated: 7861; Mature: 7861

Theoretical pI: Translated: 11.39; Mature: 11.39

Prosite motif: PS01181 RIBOSOMAL_S21

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSVQINDNETIDKMLKRFKKKYERAGVLKEYRANAYFVKPSIDNRLKRSRSRRRAQRAN
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHH
EERNS
CCCCC
>Mature Secondary Structure
MVSVQINDNETIDKMLKRFKKKYERAGVLKEYRANAYFVKPSIDNRLKRSRSRRRAQRAN
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHH
EERNS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA