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The map label for this gene is yddM [C]

Identifier: 78189161

GI number: 78189161

Start: 1587393

End: 1588502

Strand: Reverse

Name: yddM [C]

Synonym: Cag_1194

Alternate gene names: 78189161

Gene position: 1588502-1587393 (Counterclockwise)

Preceding gene: 78189162

Following gene: 78189159

Centisome position: 61.76

GC content: 36.04

Gene sequence:

>1110_bases
ATGAAGAATAACTATAAGAGCAAAGAGGATATTGCGGTTGCTCGTGAAATTATTTCCTGCCCTGGTGATACGCTTGCTGA
ACACCTTGAGTACATGGGTATGAGTCAAGCAGAGTTAGCCGAGCGAATGGGCAGACCCAAAAAAACTATTAATGAAATTA
TTCAAGGCAAGGCGCAAATTACTCCTGAAACCGCGTTACAACTTGAACGAGTAGTTGGAATTTCTGCTACTTTTTGGATG
AACCTTGAACACAATTATCGTTTATTGCTTGCTGAACTTGATGAGGCTGAAAAACGTATTGTAGATGCTGAGTGGGCAAA
ACAGTTCCCTTTACAAGAGATGATAGATAAAGGATGGATTACTGTTGATAATGGTTGCGATAATGCAATAAATACGATTC
TCTCATTTTTTAAAGTAGCAACACCTCAAGCGTATCAAAATTATTGCCATAATCAACTCTATGCCACAGCTTATCGTATG
AGTGAAACATGTAGTAAAGATCCTCATGCTGTTGCGGCATGGTTACGGCAAGGTGAACGTCAGGCAGAATATCTAAAAGC
TGTACTATTTGATAGAAAAAAATTTGAAGAAATGTTATTGACTATCAAAAAGCTTATAGTGCAAGATGATAACTTTTTTG
AAGCACTTCAAGACTGTTGTTTACAAGCAGGTGTTAAAGTTGTGCATACTCCATGTTTAAAGAAAGCTCCATTAAACGGT
TCAACACGTTGGATTAATGATAGTCCACTTATTCAACTTTCAAACCGTTTTAATCGTAACGATATTTTTTGGTTTACCTT
TTTCCATGAAGCCGCCCATATTATAAAGCATAATAAAAAAGATGTTTTTATTGAGGGTATGGATTATTCTTTTGATGGCA
AAAAGAAAGAGGATGAGGCAAATATGTATGCTGAGGAATATTTGATAAGTAGGAAAGAAGAAAATGAGTTGCTTGCAAGT
ACATCGTTTCAAAAAGATGATATCCAGCATTTTGCTGAAAAGTTTTCTACACATCCAGCAGTGGTGATTGGACGATTAGT
AAATAAAGGAAAAGTAAAAGCTGAGCTTGGGCATCTGTATGGTTTTTATAAGAAAGTTGAGTTGCATTAA

Upstream 100 bases:

>100_bases
TCCTATTCCATTAAAGGATGATGGTGGGCTTGATTGGAGAGAGGTAACTTGTATTATAATTACAGCAATTGGTGAAGATT
ATCATTAATACTATAATGCT

Downstream 100 bases:

>100_bases
AGAAATGAAACCTCATTCGCTTTTTGTTTTTATTAGGCTAAACAACTCCAACAACTCTTCAATGGAAAGCGCTTCAGCAC
GCAACTGTAGTTTATTGCTA

Product: XRE family plasmid maintenance system antidote protein

Products: NA

Alternate protein names: XRE Family Plasmid Maintenance System Antidote Protein; Plasmid Maintenance System Antidote Protein; Helix-Turn-Helix Domain-Containing Protein; Addiction Module Antidote Protein HigA Family; HTH-Type Transcriptional Regulator; Virulence-Associated Protein I; Metal-Dependent Peptidase; Helix-Turn-Helix Domain Protein; Plasmid Maintenance System Antidote Protein Xre Family; Addiction Module Antidote Protein; Transcription Regulator With HTH Domain

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MKNNYKSKEDIAVAREIISCPGDTLAEHLEYMGMSQAELAERMGRPKKTINEIIQGKAQITPETALQLERVVGISATFWM
NLEHNYRLLLAELDEAEKRIVDAEWAKQFPLQEMIDKGWITVDNGCDNAINTILSFFKVATPQAYQNYCHNQLYATAYRM
SETCSKDPHAVAAWLRQGERQAEYLKAVLFDRKKFEEMLLTIKKLIVQDDNFFEALQDCCLQAGVKVVHTPCLKKAPLNG
STRWINDSPLIQLSNRFNRNDIFWFTFFHEAAHIIKHNKKDVFIEGMDYSFDGKKKEDEANMYAEEYLISRKEENELLAS
TSFQKDDIQHFAEKFSTHPAVVIGRLVNKGKVKAELGHLYGFYKKVELH

Sequences:

>Translated_369_residues
MKNNYKSKEDIAVAREIISCPGDTLAEHLEYMGMSQAELAERMGRPKKTINEIIQGKAQITPETALQLERVVGISATFWM
NLEHNYRLLLAELDEAEKRIVDAEWAKQFPLQEMIDKGWITVDNGCDNAINTILSFFKVATPQAYQNYCHNQLYATAYRM
SETCSKDPHAVAAWLRQGERQAEYLKAVLFDRKKFEEMLLTIKKLIVQDDNFFEALQDCCLQAGVKVVHTPCLKKAPLNG
STRWINDSPLIQLSNRFNRNDIFWFTFFHEAAHIIKHNKKDVFIEGMDYSFDGKKKEDEANMYAEEYLISRKEENELLAS
TSFQKDDIQHFAEKFSTHPAVVIGRLVNKGKVKAELGHLYGFYKKVELH
>Mature_369_residues
MKNNYKSKEDIAVAREIISCPGDTLAEHLEYMGMSQAELAERMGRPKKTINEIIQGKAQITPETALQLERVVGISATFWM
NLEHNYRLLLAELDEAEKRIVDAEWAKQFPLQEMIDKGWITVDNGCDNAINTILSFFKVATPQAYQNYCHNQLYATAYRM
SETCSKDPHAVAAWLRQGERQAEYLKAVLFDRKKFEEMLLTIKKLIVQDDNFFEALQDCCLQAGVKVVHTPCLKKAPLNG
STRWINDSPLIQLSNRFNRNDIFWFTFFHEAAHIIKHNKKDVFIEGMDYSFDGKKKEDEANMYAEEYLISRKEENELLAS
TSFQKDDIQHFAEKFSTHPAVVIGRLVNKGKVKAELGHLYGFYKKVELH

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42603; Mature: 42603

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNNYKSKEDIAVAREIISCPGDTLAEHLEYMGMSQAELAERMGRPKKTINEIIQGKAQI
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC
TPETALQLERVVGISATFWMNLEHNYRLLLAELDEAEKRIVDAEWAKQFPLQEMIDKGWI
CHHHHHHHHHHHCCEEEEEEECCCCCEEEEEHHHHHHHHHHCHHHHHCCCHHHHHHCCCE
TVDNGCDNAINTILSFFKVATPQAYQNYCHNQLYATAYRMSETCSKDPHAVAAWLRQGER
EECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHH
QAEYLKAVLFDRKKFEEMLLTIKKLIVQDDNFFEALQDCCLQAGVKVVHTPCLKKAPLNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHCCCHHHCCCCCC
STRWINDSPLIQLSNRFNRNDIFWFTFFHEAAHIIKHNKKDVFIEGMDYSFDGKKKEDEA
CCCEECCCCCEEECCCCCCCCEEEEHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHH
NMYAEEYLISRKEENELLASTSFQKDDIQHFAEKFSTHPAVVIGRLVNKGKVKAELGHLY
HHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHH
GFYKKVELH
HHHHHEECC
>Mature Secondary Structure
MKNNYKSKEDIAVAREIISCPGDTLAEHLEYMGMSQAELAERMGRPKKTINEIIQGKAQI
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC
TPETALQLERVVGISATFWMNLEHNYRLLLAELDEAEKRIVDAEWAKQFPLQEMIDKGWI
CHHHHHHHHHHHCCEEEEEEECCCCCEEEEEHHHHHHHHHHCHHHHHCCCHHHHHHCCCE
TVDNGCDNAINTILSFFKVATPQAYQNYCHNQLYATAYRMSETCSKDPHAVAAWLRQGER
EECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHH
QAEYLKAVLFDRKKFEEMLLTIKKLIVQDDNFFEALQDCCLQAGVKVVHTPCLKKAPLNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHCCCHHHCCCCCC
STRWINDSPLIQLSNRFNRNDIFWFTFFHEAAHIIKHNKKDVFIEGMDYSFDGKKKEDEA
CCCEECCCCCEEECCCCCCCCEEEEHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHH
NMYAEEYLISRKEENELLASTSFQKDDIQHFAEKFSTHPAVVIGRLVNKGKVKAELGHLY
HHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHH
GFYKKVELH
HHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA