Click here to switch to the map view.

The map label for this gene is recR

Identifier: 78189156

GI number: 78189156

Start: 1583846

End: 1584460

Strand: Reverse

Name: recR

Synonym: Cag_1189

Alternate gene names: 78189156

Gene position: 1584460-1583846 (Counterclockwise)

Preceding gene: 78189157

Following gene: 78189155

Centisome position: 61.6

GC content: 48.62

Gene sequence:

>615_bases
ATGCGATTTCCTTCCGTTGCGCTTGATACTCTGATTGACGAATTTGCAAAGCTTCCCGGTATTGGGCGCAAAACTGCTCA
ACGCTTGGCTATGTACATTTTGCATGAGCCAAAAATAGAGGCGGAGCAGTTAGCTAAAGCGCTGCTTGATGTTAAAGAAA
AAGTGGTGCGCTGTACCATTTGCCAAAACATTACCGATGTTGGCACCGACCCTTGTGCTATTTGTGCCAGCAAGGCTCGC
GATCGCACGGTAATTTGCGTGGTTGAGTCGCCCGTAGATATGTTGGCTTTTGAAAAAACAGGGCATTACAAAGGCTTGTA
CCATGTGCTCCATGGCGTTATTTCGCCGCTTGATGGTGTAGGACCCGATGACATTAAAGTGCGTGAGTTATTAGCCCGCA
TTCCTGTTGGCGAGGCTTCGGGAGTGCGCGAAGTGGTGTTGGCATTAAATCCCACCATTGAGGGTGAAACAACATCGCTG
TATTTAGCGCGTTTATTGAAACCGCTTGGTATTGCCGTTACTAAAATTGCACGAGGCATTCCTGTTGGTGCCGAGCTTGA
GTATGTGGATGAGGCAACGTTATCGCGAGCTATGGAAGGGCGCACAGTGGTATAG

Upstream 100 bases:

>100_bases
TCGTTAAAGCTTGCGCAAGATGAAATTGGTAAGGTTACTGGTGGTATGATGAATCCTACCGAATTATTAAAAAACCTCAA
TCTTGGTCAATAAAGGGTAG

Downstream 100 bases:

>100_bases
GTTTGTGTCAATCTTACATTGACAGAAAGAGTGTGACACAATACTAAGGATAAGTCCACAATAGCGATACGCCCCGACTC
TGAGGTGGTTTTTACTTCGA

Product: recombination protein RecR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MRFPSVALDTLIDEFAKLPGIGRKTAQRLAMYILHEPKIEAEQLAKALLDVKEKVVRCTICQNITDVGTDPCAICASKAR
DRTVICVVESPVDMLAFEKTGHYKGLYHVLHGVISPLDGVGPDDIKVRELLARIPVGEASGVREVVLALNPTIEGETTSL
YLARLLKPLGIAVTKIARGIPVGAELEYVDEATLSRAMEGRTVV

Sequences:

>Translated_204_residues
MRFPSVALDTLIDEFAKLPGIGRKTAQRLAMYILHEPKIEAEQLAKALLDVKEKVVRCTICQNITDVGTDPCAICASKAR
DRTVICVVESPVDMLAFEKTGHYKGLYHVLHGVISPLDGVGPDDIKVRELLARIPVGEASGVREVVLALNPTIEGETTSL
YLARLLKPLGIAVTKIARGIPVGAELEYVDEATLSRAMEGRTVV
>Mature_204_residues
MRFPSVALDTLIDEFAKLPGIGRKTAQRLAMYILHEPKIEAEQLAKALLDVKEKVVRCTICQNITDVGTDPCAICASKAR
DRTVICVVESPVDMLAFEKTGHYKGLYHVLHGVISPLDGVGPDDIKVRELLARIPVGEASGVREVVLALNPTIEGETTSL
YLARLLKPLGIAVTKIARGIPVGAELEYVDEATLSRAMEGRTVV

Specific function: May play a role in DNA repair. It seems to be involved in an recBC-independent recombinational process of DNA repair. It may act with recF and recO

COG id: COG0353

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain

Homologues:

Organism=Escherichia coli, GI1786678, Length=195, Percent_Identity=42.0512820512821, Blast_Score=153, Evalue=8e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECR_CHLCH (Q3ARC4)

Other databases:

- EMBL:   CP000108
- RefSeq:   YP_379494.1
- ProteinModelPortal:   Q3ARC4
- SMR:   Q3ARC4
- STRING:   Q3ARC4
- GeneID:   3748223
- GenomeReviews:   CP000108_GR
- KEGG:   cch:Cag_1189
- eggNOG:   COG0353
- HOGENOM:   HBG571744
- OMA:   HGAISPM
- ProtClustDB:   PRK00076
- BioCyc:   CCHL340177:CAG_1189-MONOMER
- HAMAP:   MF_00017
- InterPro:   IPR003583
- InterPro:   IPR000093
- InterPro:   IPR006171
- InterPro:   IPR015967
- SMART:   SM00278
- SMART:   SM00493
- TIGRFAMs:   TIGR00615

Pfam domain/function: PF02132 RecR; PF01751 Toprim; SSF111304 RecR

EC number: NA

Molecular weight: Translated: 22128; Mature: 22128

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS01300 RECR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFPSVALDTLIDEFAKLPGIGRKTAQRLAMYILHEPKIEAEQLAKALLDVKEKVVRCTI
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
CQNITDVGTDPCAICASKARDRTVICVVESPVDMLAFEKTGHYKGLYHVLHGVISPLDGV
HHHHHHCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
GPDDIKVRELLARIPVGEASGVREVVLALNPTIEGETTSLYLARLLKPLGIAVTKIARGI
CCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PVGAELEYVDEATLSRAMEGRTVV
CCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRFPSVALDTLIDEFAKLPGIGRKTAQRLAMYILHEPKIEAEQLAKALLDVKEKVVRCTI
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
CQNITDVGTDPCAICASKARDRTVICVVESPVDMLAFEKTGHYKGLYHVLHGVISPLDGV
HHHHHHCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
GPDDIKVRELLARIPVGEASGVREVVLALNPTIEGETTSLYLARLLKPLGIAVTKIARGI
CCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PVGAELEYVDEATLSRAMEGRTVV
CCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA