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The map label for this gene is pds [H]

Identifier: 78189155

GI number: 78189155

Start: 1582340

End: 1583725

Strand: Reverse

Name: pds [H]

Synonym: Cag_1188

Alternate gene names: 78189155

Gene position: 1583725-1582340 (Counterclockwise)

Preceding gene: 78189156

Following gene: 78189154

Centisome position: 61.57

GC content: 44.37

Gene sequence:

>1386_bases
ATGAGTTCAGAAAAAAAATCAGTTGTTATTCTTGGTGGTGGTTTAGCTGGTCTTACCGCTGCCAAGCGCCTTACCGATTT
GGGATTTCAGGTTAAGCTGCTTGAAAAGCGAAACATTTTTGGTGGCAAAGTTTCTTCATGGAAAGATGAAGAGGGCGATT
GGATTGAATCGGGTACCCATTGCTTTTTTGGCGCTTACGACGTCTTGTACGACTTACTGCGCGAAATTGGCACTTATCAC
GCTGTGCAGTGGAAAGATCATCAACTTACCTATACGCTTGCTGGTGGTAATGCCTTTACTTTTAAAACATGGGATATGCC
AAGCCCGTTGCATCTTTTACCAGCAATTGCAAGCAATGGTTACTTTAGCGCAGGTGAAATGGCAGCTTTTGCCAAATCGC
TTATTCCCCTTGCCTTTTTAAAAGCCGATTATCCTCCAACGCAAGATCACCTCACCTTTGCCGAGTGGGCGCAAGAGAAA
AAATTTGGCACCCGTTTGATGGATACCATGTTCCGTCCAATGGCGCTTGCCTTAAAGTTTATTCCTCCCGAAGAGATTTC
GGCTAAAATTATTCTTGATGTAACCGAAACCTTTTACCGCATTCCAGATTCATCGTGCATGGGCTTCCTGAAAGGTGCAC
CGCAAGAGTATCTCCATCAGCCATTAGTTGATTATTTAACGGAGCGTGGAGCTGAGTTACAAACCAATGTAACGGTTGAT
GAATTGCTTTTTGATGGCAGTGATATTAAAGGCGTACAACTTCTCAACGGTGAAATTCTGACCGCCGATTACTACCTTTG
CGCATTGCCAATTCACAACCTTAACAAGGTACTACCGCAAAACCTTAAGGATTACGATTTCTTTTTTAACCGCCTTGAAA
ATCTTGAAGGTGTGCCCGTTATTTCTGTACAAATTTGGTACGATACCGAAATTACCTCTGCCAATAATGTGCTCTTTTCG
CCCGATGGCGTTATTCCTGTTTATGCCAACCTTGCGCGTACAACACCAGAATATCAAACCTTGCGTGGCAAACCATTTAC
CGGTAAAAGCCGCTTTGAATTTTGCGTTGCCCCAGCTCGCGAATTAATGGGGTTATCGAAATACGAAATTATCCGCATGG
TTGACCAAAGTATTCGGAACTGCTATCCCAAAACCTCACGAGGCGCACAAATTTTAAAATCAACGGTAGTAAAAATTCCC
CACTCAGTTTATGCGCCGCTACCCAATATGGAGCAACATCGCCCAACACAGCAAACCCCTGTAAGCAACCTCTTTCTTGC
AGGCGGTTTTTCGCGTCAGTTATACTACGATTCAATGGGTGGCGCTGTTATGAGTGCCAACTTAGCCGCCAAAGCATTAG
CAAAAGCCGCTGGGTGCGAAGAATAA

Upstream 100 bases:

>100_bases
GACAGAAAGAGTGTGACACAATACTAAGGATAAGTCCACAATAGCGATACGCCCCGACTCTGAGGTGGTTTTTACTTCGA
TATAGAAATATTTTTAAATA

Downstream 100 bases:

>100_bases
AGGCAGGGGAGTAAGCGGGCAATTTTTATTGGTGCCAAGCTTATGAAAGCAGCCAGAATTTTCTATTTTAACGCCCTCTT
AACCAAGCCCTTGTAGCTCA

Product: phytoene desaturase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 461; Mature: 460

Protein sequence:

>461_residues
MSSEKKSVVILGGGLAGLTAAKRLTDLGFQVKLLEKRNIFGGKVSSWKDEEGDWIESGTHCFFGAYDVLYDLLREIGTYH
AVQWKDHQLTYTLAGGNAFTFKTWDMPSPLHLLPAIASNGYFSAGEMAAFAKSLIPLAFLKADYPPTQDHLTFAEWAQEK
KFGTRLMDTMFRPMALALKFIPPEEISAKIILDVTETFYRIPDSSCMGFLKGAPQEYLHQPLVDYLTERGAELQTNVTVD
ELLFDGSDIKGVQLLNGEILTADYYLCALPIHNLNKVLPQNLKDYDFFFNRLENLEGVPVISVQIWYDTEITSANNVLFS
PDGVIPVYANLARTTPEYQTLRGKPFTGKSRFEFCVAPARELMGLSKYEIIRMVDQSIRNCYPKTSRGAQILKSTVVKIP
HSVYAPLPNMEQHRPTQQTPVSNLFLAGGFSRQLYYDSMGGAVMSANLAAKALAKAAGCEE

Sequences:

>Translated_461_residues
MSSEKKSVVILGGGLAGLTAAKRLTDLGFQVKLLEKRNIFGGKVSSWKDEEGDWIESGTHCFFGAYDVLYDLLREIGTYH
AVQWKDHQLTYTLAGGNAFTFKTWDMPSPLHLLPAIASNGYFSAGEMAAFAKSLIPLAFLKADYPPTQDHLTFAEWAQEK
KFGTRLMDTMFRPMALALKFIPPEEISAKIILDVTETFYRIPDSSCMGFLKGAPQEYLHQPLVDYLTERGAELQTNVTVD
ELLFDGSDIKGVQLLNGEILTADYYLCALPIHNLNKVLPQNLKDYDFFFNRLENLEGVPVISVQIWYDTEITSANNVLFS
PDGVIPVYANLARTTPEYQTLRGKPFTGKSRFEFCVAPARELMGLSKYEIIRMVDQSIRNCYPKTSRGAQILKSTVVKIP
HSVYAPLPNMEQHRPTQQTPVSNLFLAGGFSRQLYYDSMGGAVMSANLAAKALAKAAGCEE
>Mature_460_residues
SSEKKSVVILGGGLAGLTAAKRLTDLGFQVKLLEKRNIFGGKVSSWKDEEGDWIESGTHCFFGAYDVLYDLLREIGTYHA
VQWKDHQLTYTLAGGNAFTFKTWDMPSPLHLLPAIASNGYFSAGEMAAFAKSLIPLAFLKADYPPTQDHLTFAEWAQEKK
FGTRLMDTMFRPMALALKFIPPEEISAKIILDVTETFYRIPDSSCMGFLKGAPQEYLHQPLVDYLTERGAELQTNVTVDE
LLFDGSDIKGVQLLNGEILTADYYLCALPIHNLNKVLPQNLKDYDFFFNRLENLEGVPVISVQIWYDTEITSANNVLFSP
DGVIPVYANLARTTPEYQTLRGKPFTGKSRFEFCVAPARELMGLSKYEIIRMVDQSIRNCYPKTSRGAQILKSTVVKIPH
SVYAPLPNMEQHRPTQQTPVSNLFLAGGFSRQLYYDSMGGAVMSANLAAKALAKAAGCEE

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001613
- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 51400; Mature: 51268

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSEKKSVVILGGGLAGLTAAKRLTDLGFQVKLLEKRNIFGGKVSSWKDEEGDWIESGTH
CCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHCCCE
CFFGAYDVLYDLLREIGTYHAVQWKDHQLTYTLAGGNAFTFKTWDMPSPLHLLPAIASNG
EEEHHHHHHHHHHHHHCCEEEEEEECCEEEEEEECCCEEEEEECCCCCCHHHHHHHHCCC
YFSAGEMAAFAKSLIPLAFLKADYPPTQDHLTFAEWAQEKKFGTRLMDTMFRPMALALKF
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IPPEEISAKIILDVTETFYRIPDSSCMGFLKGAPQEYLHQPLVDYLTERGAELQTNVTVD
CCCHHCCEEEEEEEHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCHH
ELLFDGSDIKGVQLLNGEILTADYYLCALPIHNLNKVLPQNLKDYDFFFNRLENLEGVPV
HHHCCCCCCCCEEEECCEEEEECEEEEECCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEE
ISVQIWYDTEITSANNVLFSPDGVIPVYANLARTTPEYQTLRGKPFTGKSRFEFCVAPAR
EEEEEEECCEECCCCCEEECCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHH
ELMGLSKYEIIRMVDQSIRNCYPKTSRGAQILKSTVVKIPHSVYAPLPNMEQHRPTQQTP
HHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCHHCCCCCCCC
VSNLFLAGGFSRQLYYDSMGGAVMSANLAAKALAKAAGCEE
CHHEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SSEKKSVVILGGGLAGLTAAKRLTDLGFQVKLLEKRNIFGGKVSSWKDEEGDWIESGTH
CCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHCCCE
CFFGAYDVLYDLLREIGTYHAVQWKDHQLTYTLAGGNAFTFKTWDMPSPLHLLPAIASNG
EEEHHHHHHHHHHHHHCCEEEEEEECCEEEEEEECCCEEEEEECCCCCCHHHHHHHHCCC
YFSAGEMAAFAKSLIPLAFLKADYPPTQDHLTFAEWAQEKKFGTRLMDTMFRPMALALKF
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IPPEEISAKIILDVTETFYRIPDSSCMGFLKGAPQEYLHQPLVDYLTERGAELQTNVTVD
CCCHHCCEEEEEEEHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCHH
ELLFDGSDIKGVQLLNGEILTADYYLCALPIHNLNKVLPQNLKDYDFFFNRLENLEGVPV
HHHCCCCCCCCEEEECCEEEEECEEEEECCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEE
ISVQIWYDTEITSANNVLFSPDGVIPVYANLARTTPEYQTLRGKPFTGKSRFEFCVAPAR
EEEEEEECCEECCCCCEEECCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHH
ELMGLSKYEIIRMVDQSIRNCYPKTSRGAQILKSTVVKIPHSVYAPLPNMEQHRPTQQTP
HHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCHHCCCCCCCC
VSNLFLAGGFSRQLYYDSMGGAVMSANLAAKALAKAAGCEE
CHHEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1581575; 8905231 [H]