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The map label for this gene is 78188971

Identifier: 78188971

GI number: 78188971

Start: 1343970

End: 1344260

Strand: Reverse

Name: 78188971

Synonym: Cag_1004

Alternate gene names: NA

Gene position: 1344260-1343970 (Counterclockwise)

Preceding gene: 78188972

Following gene: 78188970

Centisome position: 52.26

GC content: 38.83

Gene sequence:

>291_bases
ATGATGGTATTAGTAACCTATGATGTAAATACCGAATCACCTGATGGTAAACGAAGGCTACGGCGCATTGCGAAAACTTG
CCAAAATTATGGGCAACGGGTACAGTTTTCTGTATTTGAATGTAATGTTGATCCTGCACAATGGACGAAACTAAGAGCAA
AGTTATTACGTGAAATGGATCCAAATCGAGATAGCTTACGCTTTTACTTTCTTGGCTCAAATTGGCAAAATCATATTGAG
CATGAGGGAGCTAAAGAGCCGAGAGACCTTGAAGGAGTGTTAATTTTATAA

Upstream 100 bases:

>100_bases
TGCTCGCCATATTCGTGGAGACCTTGATGTGTATCCACCTTTTGTATGGAAGTAAGTTGCAACCCGCTGCAAGCTCATGG
ATTGAAACGGAGATAAAAGC

Downstream 100 bases:

>100_bases
AGCGAACCATAAGCGATACCAAAATATCCGTTAGGTTCGCATGAGTTGTAACAGCTTTTAATATTTGGCTTTAATAATTT
ATTAGGTGAACTTTAGCCCT

Product: hypothetical protein

Products: NA

Alternate protein names: Cytoplasmic Protein; CRISPR-Associated Protein Cas2 Family; Crispr-Protein; Cas2 Family CRISPR-Associated Protein

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MMVLVTYDVNTESPDGKRRLRRIAKTCQNYGQRVQFSVFECNVDPAQWTKLRAKLLREMDPNRDSLRFYFLGSNWQNHIE
HEGAKEPRDLEGVLIL

Sequences:

>Translated_96_residues
MMVLVTYDVNTESPDGKRRLRRIAKTCQNYGQRVQFSVFECNVDPAQWTKLRAKLLREMDPNRDSLRFYFLGSNWQNHIE
HEGAKEPRDLEGVLIL
>Mature_96_residues
MMVLVTYDVNTESPDGKRRLRRIAKTCQNYGQRVQFSVFECNVDPAQWTKLRAKLLREMDPNRDSLRFYFLGSNWQNHIE
HEGAKEPRDLEGVLIL

Specific function: Unknown

COG id: COG1343

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11341; Mature: 11341

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVLVTYDVNTESPDGKRRLRRIAKTCQNYGQRVQFSVFECNVDPAQWTKLRAKLLREMD
CEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHCC
PNRDSLRFYFLGSNWQNHIEHEGAKEPRDLEGVLIL
CCCCCEEEEEECCCCCHHHCCCCCCCCCCCCCEEEC
>Mature Secondary Structure
MMVLVTYDVNTESPDGKRRLRRIAKTCQNYGQRVQFSVFECNVDPAQWTKLRAKLLREMD
CEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHCC
PNRDSLRFYFLGSNWQNHIEHEGAKEPRDLEGVLIL
CCCCCEEEEEECCCCCHHHCCCCCCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA