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The map label for this gene is 78188885

Identifier: 78188885

GI number: 78188885

Start: 1248852

End: 1249187

Strand: Reverse

Name: 78188885

Synonym: Cag_0917

Alternate gene names: NA

Gene position: 1249187-1248852 (Counterclockwise)

Preceding gene: 78188887

Following gene: 78188875

Centisome position: 48.57

GC content: 46.43

Gene sequence:

>336_bases
ATGTCTCGTTTTGTTTCTGCCGCTTTCTGCGCTCTTTTTATTGTTTCAATGGGAAGTACTGCAATGGCTGCTACTTATAA
TGCGGCTGCTGGAAAAAAAGTGTATGATGCAAGCTGCGCAACCTGCCATAAAACGGGCATGATGGGCGCTCCAAAACTTG
GCGATAAAGCTAATTGGGCTCCACGTATTGCTCAGGGCATGGATAAGCTTGTAAGCAAGTCAGTAGCAGGTTACAAGGGC
GCTAAAGGTATGATGCCTGCTAAAGGTGGCAACGCAAAACTTACGAAGCCTGAAGTTGGTAACGCCGTTGCTTACATGGT
TCAGCAGAGCAAATAA

Upstream 100 bases:

>100_bases
GCGAAATGTTTGGAAGGATAGTGATTAATTATTAAACTAAGCAGTTATGTGAATAAGTGCTGTTCACGTTTCCCCTCAAC
TTTAAACAAGGAAATCAACT

Downstream 100 bases:

>100_bases
GCCTCTTTACCTTGCGTTATAAAAGCACAAAGGCGGGAAGTAATATCCCGCCTTTTTTTGTTTGCGCGTCATAACATGGC
AGTTGGCGCTATTATGGCTG

Product: cytochrome c-555

Products: NA

Alternate protein names: Cytochrome c555 [H]

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MSRFVSAAFCALFIVSMGSTAMAATYNAAAGKKVYDASCATCHKTGMMGAPKLGDKANWAPRIAQGMDKLVSKSVAGYKG
AKGMMPAKGGNAKLTKPEVGNAVAYMVQQSK

Sequences:

>Translated_111_residues
MSRFVSAAFCALFIVSMGSTAMAATYNAAAGKKVYDASCATCHKTGMMGAPKLGDKANWAPRIAQGMDKLVSKSVAGYKG
AKGMMPAKGGNAKLTKPEVGNAVAYMVQQSK
>Mature_110_residues
SRFVSAAFCALFIVSMGSTAMAATYNAAAGKKVYDASCATCHKTGMMGAPKLGDKANWAPRIAQGMDKLVSKSVAGYKGA
KGMMPAKGGNAKLTKPEVGNAVAYMVQQSK

Specific function: This basic c-type monoheme cytochrome has been found exclusively in the green photosynthetic bacteria, although its role in bacterial photosynthesis is not established. It has an unusually low redox potential compared with mitochondrial cytochrome c. It i

COG id: COG3245

COG function: function code C; Cytochrome c5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002323 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 11460; Mature: 11328

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
8.1 %Met     (Translated Protein)
10.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
7.3 %Met     (Mature Protein)
10.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRFVSAAFCALFIVSMGSTAMAATYNAAAGKKVYDASCATCHKTGMMGAPKLGDKANWA
CCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCC
PRIAQGMDKLVSKSVAGYKGAKGMMPAKGGNAKLTKPEVGNAVAYMVQQSK
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEECCC
>Mature Secondary Structure 
SRFVSAAFCALFIVSMGSTAMAATYNAAAGKKVYDASCATCHKTGMMGAPKLGDKANWA
CHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCC
PRIAQGMDKLVSKSVAGYKGAKGMMPAKGGNAKLTKPEVGNAVAYMVQQSK
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]