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The map label for this gene is arnC [H]

Identifier: 78188583

GI number: 78188583

Start: 708736

End: 709668

Strand: Reverse

Name: arnC [H]

Synonym: Cag_0605

Alternate gene names: 78188583

Gene position: 709668-708736 (Counterclockwise)

Preceding gene: 78188584

Following gene: 78188582

Centisome position: 27.59

GC content: 40.73

Gene sequence:

>933_bases
ATGGAGCTTTCGGTTGTTATACCGTTAATGAATGAAGCGGATAATATTGAACCGCTTTTTTCAGCACTTAATAAAGCGCT
TAGAAACATTGAGCACGAAATTGTTTTAGTTGACGATGGCTCCACCGATAACACCGTTGAAACCATTCAGCGCTATGCAA
CAGCTACCACCAAACTTGTGGTGCTGAACAAAAATTATGGGCAAACCGCCGCTATGGCTGCTGGCATTGAGCAAGCTTCA
GGGGAATTAATTGCCACGATGGATGGCGATTTGCAAAATGACCCCGACGACATTCCCATGATGATTCGCTACCTTTACGA
CAACAACCTTGATGTGGTGGCAGGACGAAGAGCTGCACGTCAGGATGGTATGTTGTTGCGCAAAATTCCAAGCAAAATTG
CTAATGCTATGATTCGCAACCTCACCAACGTGCACATGCACGATTACGGTTGCACGCTTAAAGTATTCAAACGCAATGTT
GCTAAGAATTTAGGATTATATGGCGAGCTGCACCGCTTTATTCCCGTTTTAGTACAACTCTACGGTGCTAAAATGGCAGA
AGTTAATGTACGCCACCATCCTCGTAAATTTGGAACTTCCAAATATGGTATTGGACGCACCTGTCGTGTATTGAGCGATC
TTTTATTTATGCTCTTTTTCCAAAAATATAGCCAAAAGCCAATGCACCTTTTTGGTTCTTTGGGATTTATTTCGCTTGCA
ATTGGAATGAGCATTAATGCCTATCTCTTAGCTATAAAAATTCTGGGTGAAGATATTGGCGGACGTCCACTTCTTTCGCT
TGGCATTATTTTAACCTTTATTGGCATTCAGCTTATTACCACAGGTTTTATAGCTGAATTTATTATGCGAACCTATTACG
AATCGCAAAACAAAAAAACTTACATTATTAAAGACGTTGTTAGCAAAAATTAA

Upstream 100 bases:

>100_bases
CGTAAAACATATTGCCAAGCTAAATGTAACTACATTACTCTATAGCAAACATGGAATTGTGCTTGCTAAGGTGCCATACT
AATTTTTCTTTTTATAAAAA

Downstream 100 bases:

>100_bases
GCTTACCCCAAAGCAACTCCTTAAACCACTGCTGCAAATTGTTGTAACTGCCATTGCGCTCTACGTGGTTTTCCAAAAAA
TTGATATAGCGCAGCTTACA

Product: glycosyl transferase

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MELSVVIPLMNEADNIEPLFSALNKALRNIEHEIVLVDDGSTDNTVETIQRYATATTKLVVLNKNYGQTAAMAAGIEQAS
GELIATMDGDLQNDPDDIPMMIRYLYDNNLDVVAGRRAARQDGMLLRKIPSKIANAMIRNLTNVHMHDYGCTLKVFKRNV
AKNLGLYGELHRFIPVLVQLYGAKMAEVNVRHHPRKFGTSKYGIGRTCRVLSDLLFMLFFQKYSQKPMHLFGSLGFISLA
IGMSINAYLLAIKILGEDIGGRPLLSLGIILTFIGIQLITTGFIAEFIMRTYYESQNKKTYIIKDVVSKN

Sequences:

>Translated_310_residues
MELSVVIPLMNEADNIEPLFSALNKALRNIEHEIVLVDDGSTDNTVETIQRYATATTKLVVLNKNYGQTAAMAAGIEQAS
GELIATMDGDLQNDPDDIPMMIRYLYDNNLDVVAGRRAARQDGMLLRKIPSKIANAMIRNLTNVHMHDYGCTLKVFKRNV
AKNLGLYGELHRFIPVLVQLYGAKMAEVNVRHHPRKFGTSKYGIGRTCRVLSDLLFMLFFQKYSQKPMHLFGSLGFISLA
IGMSINAYLLAIKILGEDIGGRPLLSLGIILTFIGIQLITTGFIAEFIMRTYYESQNKKTYIIKDVVSKN
>Mature_310_residues
MELSVVIPLMNEADNIEPLFSALNKALRNIEHEIVLVDDGSTDNTVETIQRYATATTKLVVLNKNYGQTAAMAAGIEQAS
GELIATMDGDLQNDPDDIPMMIRYLYDNNLDVVAGRRAARQDGMLLRKIPSKIANAMIRNLTNVHMHDYGCTLKVFKRNV
AKNLGLYGELHRFIPVLVQLYGAKMAEVNVRHHPRKFGTSKYGIGRTCRVLSDLLFMLFFQKYSQKPMHLFGSLGFISLA
IGMSINAYLLAIKILGEDIGGRPLLSLGIILTFIGIQLITTGFIAEFIMRTYYESQNKKTYIIKDVVSKN

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI4503363, Length=171, Percent_Identity=30.4093567251462, Blast_Score=76, Evalue=4e-14,
Organism=Escherichia coli, GI1788588, Length=313, Percent_Identity=33.5463258785943, Blast_Score=178, Evalue=4e-46,
Organism=Escherichia coli, GI1788692, Length=312, Percent_Identity=27.8846153846154, Blast_Score=113, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI71999402, Length=230, Percent_Identity=27.3913043478261, Blast_Score=85, Evalue=6e-17,
Organism=Saccharomyces cerevisiae, GI6325441, Length=153, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24585265, Length=234, Percent_Identity=26.0683760683761, Blast_Score=82, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 34682; Mature: 34682

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELSVVIPLMNEADNIEPLFSALNKALRNIEHEIVLVDDGSTDNTVETIQRYATATTKLV
CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHEEEE
VLNKNYGQTAAMAAGIEQASGELIATMDGDLQNDPDDIPMMIRYLYDNNLDVVAGRRAAR
EEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHH
QDGMLLRKIPSKIANAMIRNLTNVHMHDYGCTLKVFKRNVAKNLGLYGELHRFIPVLVQL
HCCHHHHHHHHHHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
YGAKMAEVNVRHHPRKFGTSKYGIGRTCRVLSDLLFMLFFQKYSQKPMHLFGSLGFISLA
HCCHHEEECCHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
IGMSINAYLLAIKILGEDIGGRPLLSLGIILTFIGIQLITTGFIAEFIMRTYYESQNKKT
HHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
YIIKDVVSKN
EEEHHHHCCC
>Mature Secondary Structure
MELSVVIPLMNEADNIEPLFSALNKALRNIEHEIVLVDDGSTDNTVETIQRYATATTKLV
CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHEEEE
VLNKNYGQTAAMAAGIEQASGELIATMDGDLQNDPDDIPMMIRYLYDNNLDVVAGRRAAR
EEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHH
QDGMLLRKIPSKIANAMIRNLTNVHMHDYGCTLKVFKRNVAKNLGLYGELHRFIPVLVQL
HCCHHHHHHHHHHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
YGAKMAEVNVRHHPRKFGTSKYGIGRTCRVLSDLLFMLFFQKYSQKPMHLFGSLGFISLA
HCCHHEEECCHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
IGMSINAYLLAIKILGEDIGGRPLLSLGIILTFIGIQLITTGFIAEFIMRTYYESQNKKT
HHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
YIIKDVVSKN
EEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA