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The map label for this gene is ydcP [C]

Identifier: 78188525

GI number: 78188525

Start: 651268

End: 652536

Strand: Reverse

Name: ydcP [C]

Synonym: Cag_0547

Alternate gene names: 78188525

Gene position: 652536-651268 (Counterclockwise)

Preceding gene: 78188526

Following gene: 78188524

Centisome position: 25.37

GC content: 46.65

Gene sequence:

>1269_bases
ATGACACCCTTGAAAAGTCAACCGAACCATTCAATTCCACAAGCTGAACTTATTGCCCCCGCAGGCGATATGACGGCGCT
TGTAACTGCTTTACAGGCAGGTGCCGATGCCGTCTATTTTGGTGCCGAAGGCTATAACATGCGAGCAGGCAGCAACAACT
TTACAAATAGCGACTTTGCTACGGTGCGTGCCCTCTGTTCCAAGCACAACGCAAAAGCCTATCTTGCACTTAACACCATT
ATTTACGATAGCGAGCTCAAGCAGATGCGCCAAAGCGTTGAAAGCGCAAAAGCCGCTGGTATTGACGCTATTATTTGCTC
CGATATGGCAGTTATTGAAGCGTGTCGCCAAGCCGAAATGCCCATCCACCTCTCCACCCAAGCCTCTGTAAGCAACTACA
ACACACTCCGCTTTTTTGCAGAGCAGGGTGCCGCCATGGTTGTGCTTGCTCGCGAGCTTACCATCGAGCAAGTGCGCCAC
ATTACACGCAACATTCAGCACGACAGCTTACCTGTTCGCATTGAGTGCTTTGTGCACGGAGCCATGTGCGTTGCGGTGTC
GGGGCGTTGCTTTCTTTCACAGGAGTTATTTGGGCGATCAGCAAATCGAGGACAATGTGTTCAGCCATGTCGCCGTAGCT
ACATTATTACCGATCCCGAAGAGAACGAAGAGCTTGAGCTTGGCGCTGATTACGTGATGAGCCCAAAAGATTTATGCGCC
ATTGAATTTCTTGATGTATTGCTTGATGCTGGCATTAGCGCCTTTAAAATTGAAGGAAGGAGCCGTAGCCCCGAATACGT
TCACACTACTACTACGGCATATCGCCAAGCACTCAATATGTGCATGCAGCAGCGCCACCAAGCCGATTTTAGAAACCGTT
ACAGCGCCTTAACAGCTTCGTTAAAGCACGATTTAGCAACAGTTTACAATCGAGGATTTTCTAACGGCTTTTATTTCGGC
AAGCCTATGGAGGCATGGGCACAAACGTATGGATCACAAGCAACGGAGAAAAAAACCTATATAGGCGACATCAATAAATA
CTTTCCAAAAGCAGGAATTGCTGAATTACACATTCGAGCACGAGGTTTAAAGCAAGGCGATAAACTTTCTATTCTTGGTG
TAAAAAGTGGGATGGTAACGGTTATAGCTGATTCATTTCTTACCAACGATCAACCAAATACGGAAGCAATAAAAGGGGAT
AGCGTTACCTTTAAATGCCCTCCCGTTCGCAAAAATGATAAAGTATATGTTTTAGAGGAGAGAAAGTAA

Upstream 100 bases:

>100_bases
TTACAGCAAATGATTAAGGCAATTCTTGATTCAACGCAGCAGGTTGGGTAGGAAGTGGGCAATGGTATGCCCTTGCCTTC
ATCTATAAAAAATTCGTACT

Downstream 100 bases:

>100_bases
AGAGTGATAACTCTGCTTTTTCCGATAATATAAACCAACTCTTCAGTAGTGAGGTTAAGCAACCCTTCAACTGTTCCACT
GTTTCTACCTGCCGCCCCAA

Product: collagenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MTPLKSQPNHSIPQAELIAPAGDMTALVTALQAGADAVYFGAEGYNMRAGSNNFTNSDFATVRALCSKHNAKAYLALNTI
IYDSELKQMRQSVESAKAAGIDAIICSDMAVIEACRQAEMPIHLSTQASVSNYNTLRFFAEQGAAMVVLARELTIEQVRH
ITRNIQHDSLPVRIECFVHGAMCVAVSGRCFLSQELFGRSANRGQCVQPCRRSYIITDPEENEELELGADYVMSPKDLCA
IEFLDVLLDAGISAFKIEGRSRSPEYVHTTTTAYRQALNMCMQQRHQADFRNRYSALTASLKHDLATVYNRGFSNGFYFG
KPMEAWAQTYGSQATEKKTYIGDINKYFPKAGIAELHIRARGLKQGDKLSILGVKSGMVTVIADSFLTNDQPNTEAIKGD
SVTFKCPPVRKNDKVYVLEERK

Sequences:

>Translated_422_residues
MTPLKSQPNHSIPQAELIAPAGDMTALVTALQAGADAVYFGAEGYNMRAGSNNFTNSDFATVRALCSKHNAKAYLALNTI
IYDSELKQMRQSVESAKAAGIDAIICSDMAVIEACRQAEMPIHLSTQASVSNYNTLRFFAEQGAAMVVLARELTIEQVRH
ITRNIQHDSLPVRIECFVHGAMCVAVSGRCFLSQELFGRSANRGQCVQPCRRSYIITDPEENEELELGADYVMSPKDLCA
IEFLDVLLDAGISAFKIEGRSRSPEYVHTTTTAYRQALNMCMQQRHQADFRNRYSALTASLKHDLATVYNRGFSNGFYFG
KPMEAWAQTYGSQATEKKTYIGDINKYFPKAGIAELHIRARGLKQGDKLSILGVKSGMVTVIADSFLTNDQPNTEAIKGD
SVTFKCPPVRKNDKVYVLEERK
>Mature_421_residues
TPLKSQPNHSIPQAELIAPAGDMTALVTALQAGADAVYFGAEGYNMRAGSNNFTNSDFATVRALCSKHNAKAYLALNTII
YDSELKQMRQSVESAKAAGIDAIICSDMAVIEACRQAEMPIHLSTQASVSNYNTLRFFAEQGAAMVVLARELTIEQVRHI
TRNIQHDSLPVRIECFVHGAMCVAVSGRCFLSQELFGRSANRGQCVQPCRRSYIITDPEENEELELGADYVMSPKDLCAI
EFLDVLLDAGISAFKIEGRSRSPEYVHTTTTAYRQALNMCMQQRHQADFRNRYSALTASLKHDLATVYNRGFSNGFYFGK
PMEAWAQTYGSQATEKKTYIGDINKYFPKAGIAELHIRARGLKQGDKLSILGVKSGMVTVIADSFLTNDQPNTEAIKGDS
VTFKCPPVRKNDKVYVLEERK

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=270, Percent_Identity=36.2962962962963, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1788397, Length=378, Percent_Identity=28.8359788359788, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1789548, Length=366, Percent_Identity=29.2349726775956, Blast_Score=138, Evalue=8e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539
- InterPro:   IPR009000 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 46690; Mature: 46558

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPLKSQPNHSIPQAELIAPAGDMTALVTALQAGADAVYFGAEGYNMRAGSNNFTNSDFA
CCCCCCCCCCCCCCHHEECCCCHHHHHHHHHHCCCCEEEECCCCCEECCCCCCCCCCHHH
TVRALCSKHNAKAYLALNTIIYDSELKQMRQSVESAKAAGIDAIICSDMAVIEACRQAEM
HHHHHHHCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHCCC
PIHLSTQASVSNYNTLRFFAEQGAAMVVLARELTIEQVRHITRNIQHDSLPVRIECFVHG
CEEEECCCCCCCCHHEEEHHHCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC
AMCVAVSGRCFLSQELFGRSANRGQCVQPCRRSYIITDPEENEELELGADYVMSPKDLCA
EEEEEECCCCEECHHHHCCCCCCCHHHHHHHCCEEEECCCCCCCEECCCCCCCCCHHHHH
IEFLDVLLDAGISAFKIEGRSRSPEYVHTTTTAYRQALNMCMQQRHQADFRNRYSALTAS
HHHHHHHHHCCCCEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKHDLATVYNRGFSNGFYFGKPMEAWAQTYGSQATEKKTYIGDINKYFPKAGIAELHIRA
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEEEE
RGLKQGDKLSILGVKSGMVTVIADSFLTNDQPNTEAIKGDSVTFKCPPVRKNDKVYVLEE
CCCCCCCEEEEEEECCCEEEEEEHHHHCCCCCCCCEECCCCEEEECCCCCCCCCEEEEEC
RK
CC
>Mature Secondary Structure 
TPLKSQPNHSIPQAELIAPAGDMTALVTALQAGADAVYFGAEGYNMRAGSNNFTNSDFA
CCCCCCCCCCCCCHHEECCCCHHHHHHHHHHCCCCEEEECCCCCEECCCCCCCCCCHHH
TVRALCSKHNAKAYLALNTIIYDSELKQMRQSVESAKAAGIDAIICSDMAVIEACRQAEM
HHHHHHHCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHCCC
PIHLSTQASVSNYNTLRFFAEQGAAMVVLARELTIEQVRHITRNIQHDSLPVRIECFVHG
CEEEECCCCCCCCHHEEEHHHCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC
AMCVAVSGRCFLSQELFGRSANRGQCVQPCRRSYIITDPEENEELELGADYVMSPKDLCA
EEEEEECCCCEECHHHHCCCCCCCHHHHHHHCCEEEECCCCCCCEECCCCCCCCCHHHHH
IEFLDVLLDAGISAFKIEGRSRSPEYVHTTTTAYRQALNMCMQQRHQADFRNRYSALTAS
HHHHHHHHHCCCCEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKHDLATVYNRGFSNGFYFGKPMEAWAQTYGSQATEKKTYIGDINKYFPKAGIAELHIRA
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEEEE
RGLKQGDKLSILGVKSGMVTVIADSFLTNDQPNTEAIKGDSVTFKCPPVRKNDKVYVLEE
CCCCCCCEEEEEEECCCEEEEEEHHHHCCCCCCCCEECCCCEEEECCCCCCCCCEEEEEC
RK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]