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The map label for this gene is 78188027

Identifier: 78188027

GI number: 78188027

Start: 49023

End: 49817

Strand: Reverse

Name: 78188027

Synonym: Cag_0043

Alternate gene names: NA

Gene position: 49817-49023 (Counterclockwise)

Preceding gene: 78188028

Following gene: 78188026

Centisome position: 1.94

GC content: 45.66

Gene sequence:

>795_bases
ATGCCACCGGCCATTAAAATCATTATTCTGGCAAACGTAGCCGTTTTTATGCTACAAAGGTTGCCATGGGGTGGTGAATT
GCTCTCTGCTTTTGCCTCACTTTGGCCAATCGGCACCGGAAACTTCTACATTTGGCAACCCGTTAGCTACATGTTTATGC
ACGGAGGTTTAACCCACCTCTTTTTTAACATGTTTGCCCTCTGGATGTTTGGTGCAGAAATAGAAAATTATTGGGGCACC
CGCCAATTCACCATTTACTACTTTATTTGTGGTATTGGCGCTGCCCTTATTAATCTCATAGCAACTATGCATTCACCCTA
CCCCACCATTGGGGCTTCAGGTGCAGTGTATGGCGTGCTTCTTGCCTTTGGCATGATGTTCCCAAACCGCTACATTTTCC
TCTACTTCTTTTTCCCCATTAAAGCCAAATACTTTATTGCAGGTTACGCCTTGCTTGAATTTGTTTCGGGGCTTGGCAGT
CGCGAAATGGGCAGCGGCAGCAACATTGCCCACTTTGCCCATCTTGGTGGAATGCTCATTGGCTTTATTTACATCATTCT
TAAACGCAACGATTGGGCACTTGATGATGTAGTGCAAAAAATGCGCTCATTACGCTCAAGCGGTGGAAAAAAAAGCTCCC
CCTACCAAGCAAACCGCAATAGCTCCAATTCAAACAAACTCACCCCAACCGACGACGAAATTAATGCCATTCTCGATAAA
ATTTCTGCTCACGGCTACGCCTCACTTACCGATGAAGAGCGCCGTAAATTATTGCGTGCTGGAGGAAATGGATAG

Upstream 100 bases:

>100_bases
CCGGCATAGCAGCTCTTAACAACTAATAATTAATTGAACGCAATAGCAGAGAGAACGTATGCGCGATACACAACCTTTTC
GCCCCGGGGGCTTCCAACTC

Downstream 100 bases:

>100_bases
AGAAATAACCTCTTTTTAATGATAGGCAATGCTACAAAAACTCATTATTAAACGATTTCGAGGCTTTAGCACTCTTGAGG
TAGATATCCCCAAAGTGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: Peptidase; Transmembrane Rhomboid Family Protein; Rhomboid-Like Protein; Integral Membrane Protein; Cytoplasmic Membrane Protein; Rhomboid Protein; Rhomboid Family Membrane Protein; Peptidase Protein; Membrane Serine Protease; GlpG Protein; S54 Family Peptidase; Rhomboid Serine Protease; Rhomboid Family Protein/GlpG-Like Protein; Serine Protease; Regulatory Proteins IclR

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MPPAIKIIILANVAVFMLQRLPWGGELLSAFASLWPIGTGNFYIWQPVSYMFMHGGLTHLFFNMFALWMFGAEIENYWGT
RQFTIYYFICGIGAALINLIATMHSPYPTIGASGAVYGVLLAFGMMFPNRYIFLYFFFPIKAKYFIAGYALLEFVSGLGS
REMGSGSNIAHFAHLGGMLIGFIYIILKRNDWALDDVVQKMRSLRSSGGKKSSPYQANRNSSNSNKLTPTDDEINAILDK
ISAHGYASLTDEERRKLLRAGGNG

Sequences:

>Translated_264_residues
MPPAIKIIILANVAVFMLQRLPWGGELLSAFASLWPIGTGNFYIWQPVSYMFMHGGLTHLFFNMFALWMFGAEIENYWGT
RQFTIYYFICGIGAALINLIATMHSPYPTIGASGAVYGVLLAFGMMFPNRYIFLYFFFPIKAKYFIAGYALLEFVSGLGS
REMGSGSNIAHFAHLGGMLIGFIYIILKRNDWALDDVVQKMRSLRSSGGKKSSPYQANRNSSNSNKLTPTDDEINAILDK
ISAHGYASLTDEERRKLLRAGGNG
>Mature_263_residues
PPAIKIIILANVAVFMLQRLPWGGELLSAFASLWPIGTGNFYIWQPVSYMFMHGGLTHLFFNMFALWMFGAEIENYWGTR
QFTIYYFICGIGAALINLIATMHSPYPTIGASGAVYGVLLAFGMMFPNRYIFLYFFFPIKAKYFIAGYALLEFVSGLGSR
EMGSGSNIAHFAHLGGMLIGFIYIILKRNDWALDDVVQKMRSLRSSGGKKSSPYQANRNSSNSNKLTPTDDEINAILDKI
SAHGYASLTDEERRKLLRAGGNG

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6321538, Length=201, Percent_Identity=31.3432835820896, Blast_Score=72, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29441; Mature: 29309

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPAIKIIILANVAVFMLQRLPWGGELLSAFASLWPIGTGNFYIWQPVSYMFMHGGLTHL
CCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEECHHHHHHHHCCHHHH
FFNMFALWMFGAEIENYWGTRQFTIYYFICGIGAALINLIATMHSPYPTIGASGAVYGVL
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
LAFGMMFPNRYIFLYFFFPIKAKYFIAGYALLEFVSGLGSREMGSGSNIAHFAHLGGMLI
HHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
GFIYIILKRNDWALDDVVQKMRSLRSSGGKKSSPYQANRNSSNSNKLTPTDDEINAILDK
HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
ISAHGYASLTDEERRKLLRAGGNG
HHCCCCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
PPAIKIIILANVAVFMLQRLPWGGELLSAFASLWPIGTGNFYIWQPVSYMFMHGGLTHL
CCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEECHHHHHHHHCCHHHH
FFNMFALWMFGAEIENYWGTRQFTIYYFICGIGAALINLIATMHSPYPTIGASGAVYGVL
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
LAFGMMFPNRYIFLYFFFPIKAKYFIAGYALLEFVSGLGSREMGSGSNIAHFAHLGGMLI
HHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
GFIYIILKRNDWALDDVVQKMRSLRSSGGKKSSPYQANRNSSNSNKLTPTDDEINAILDK
HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
ISAHGYASLTDEERRKLLRAGGNG
HHCCCCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA