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The map label for this gene is yfcH [C]

Identifier: 78187988

GI number: 78187988

Start: 4354

End: 5295

Strand: Reverse

Name: yfcH [C]

Synonym: Cag_0004

Alternate gene names: 78187988

Gene position: 5295-4354 (Counterclockwise)

Preceding gene: 78187989

Following gene: NA

Centisome position: 0.21

GC content: 44.9

Gene sequence:

>942_bases
ATGAATAATCACATTGTAATAACAGGCGCAACGGGCGTTATTGGTGTTGAACTTGCTCAAAAGCTCATAAAGCGCGGAGA
AAAAGTGGTGCTGCTTGCACGTTCACCAAATGCCGCACAACAAAAAATTCCGGGGGCAGCCGCTTATGTCCGTTGGGATT
CTGATATGCAAGAGGGAGAATGGAAAAGCACTATCAGTGGAGCCAAAGCCGTTATTCATTTAGCAGGAAAACCACTCCTT
GAAAGTCGCTGGAACGAAGAGCATAAGCAAGAATGCTACCAATCGCGCATTATAGGGACACGTCATATTGTGGCGGCTAT
TGCTGAAGCTGCTGAAAAACCACAAGTTTTTATCTCCTCTTCAGCAATTGGCTATTACGGCTCCTTCGATAAATGTAGCG
ACACGGCTCCTCTTACCGAATCAGGCAACAAAGGCAGCGACTTTTTAGCCCACATTTGTATTGATTGGGAAGAGGAGGCT
CGTAAAGCTGAAAACCTTGTGCCTCGCTTAGTGTTTTTGCGGACTGGCATTGTGCTCTCTACACGCGGCGGCATGTTGCA
AAAAATGATGACTCCATTCCAATATTTTGCAGGTGGTCCAATTGGAACAGGGTTACAGTGCATCTCATGGATTCACATGG
ATGACGAAGTCAACGCTATTATTGCATCGCTTGATAATTCTGCTTACAAAGGAGCAATTAATCTTGTAGCTCCAACGCCC
GTTTCAATGAAAGAATTTGCAAGCAAACTTGGAGCTGTTATGGGGCGACCTTCGCTTTTGCAAGTACCTGAATTTGCAGT
CAAAATGCTTATGGGCGAAGGGGGAGAATATGCTGTTCGAGGGCAAAAAGTGCTTCCTACCTTTCTTGAAAAACAAGGTT
TTACATTCCGTTACCCTGACCTTTCAAACGCACTTGGTGATTTAATTAAGCACGGAAAGTAG

Upstream 100 bases:

>100_bases
TACCACATTGCAACATTGCGAGGCTGCAATGTTGATCGTCCACGCAATTTGGCAAAATCGGTAACGGTTGAATAATTATA
AAAGTGAACGGAAGACCATT

Downstream 100 bases:

>100_bases
GGGTTAGATTACCTCAACGCTTGAATATCACAGAGTGTAATTCCTTCCGTATAACGTGGTTCAACCGCTGTAATAATTGT
TTGTCCACACTCTTTTAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MNNHIVITGATGVIGVELAQKLIKRGEKVVLLARSPNAAQQKIPGAAAYVRWDSDMQEGEWKSTISGAKAVIHLAGKPLL
ESRWNEEHKQECYQSRIIGTRHIVAAIAEAAEKPQVFISSSAIGYYGSFDKCSDTAPLTESGNKGSDFLAHICIDWEEEA
RKAENLVPRLVFLRTGIVLSTRGGMLQKMMTPFQYFAGGPIGTGLQCISWIHMDDEVNAIIASLDNSAYKGAINLVAPTP
VSMKEFASKLGAVMGRPSLLQVPEFAVKMLMGEGGEYAVRGQKVLPTFLEKQGFTFRYPDLSNALGDLIKHGK

Sequences:

>Translated_313_residues
MNNHIVITGATGVIGVELAQKLIKRGEKVVLLARSPNAAQQKIPGAAAYVRWDSDMQEGEWKSTISGAKAVIHLAGKPLL
ESRWNEEHKQECYQSRIIGTRHIVAAIAEAAEKPQVFISSSAIGYYGSFDKCSDTAPLTESGNKGSDFLAHICIDWEEEA
RKAENLVPRLVFLRTGIVLSTRGGMLQKMMTPFQYFAGGPIGTGLQCISWIHMDDEVNAIIASLDNSAYKGAINLVAPTP
VSMKEFASKLGAVMGRPSLLQVPEFAVKMLMGEGGEYAVRGQKVLPTFLEKQGFTFRYPDLSNALGDLIKHGK
>Mature_313_residues
MNNHIVITGATGVIGVELAQKLIKRGEKVVLLARSPNAAQQKIPGAAAYVRWDSDMQEGEWKSTISGAKAVIHLAGKPLL
ESRWNEEHKQECYQSRIIGTRHIVAAIAEAAEKPQVFISSSAIGYYGSFDKCSDTAPLTESGNKGSDFLAHICIDWEEEA
RKAENLVPRLVFLRTGIVLSTRGGMLQKMMTPFQYFAGGPIGTGLQCISWIHMDDEVNAIIASLDNSAYKGAINLVAPTP
VSMKEFASKLGAVMGRPSLLQVPEFAVKMLMGEGGEYAVRGQKVLPTFLEKQGFTFRYPDLSNALGDLIKHGK

Specific function: Unknown

COG id: COG1090

COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116812630, Length=309, Percent_Identity=31.7152103559871, Blast_Score=155, Evalue=7e-38,
Organism=Escherichia coli, GI1788642, Length=307, Percent_Identity=39.413680781759, Blast_Score=226, Evalue=1e-60,
Organism=Drosophila melanogaster, GI28573846, Length=319, Percent_Identity=31.6614420062696, Blast_Score=150, Evalue=7e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013549
- InterPro:   IPR001509
- InterPro:   IPR016040
- InterPro:   IPR010099 [H]

Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 34081; Mature: 34081

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNHIVITGATGVIGVELAQKLIKRGEKVVLLARSPNAAQQKIPGAAAYVRWDSDMQEGE
CCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCCEEEEEECCCCCCCC
WKSTISGAKAVIHLAGKPLLESRWNEEHKQECYQSRIIGTRHIVAAIAEAAEKPQVFISS
HHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEC
SAIGYYGSFDKCSDTAPLTESGNKGSDFLAHICIDWEEEARKAENLVPRLVFLRTGIVLS
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCEEEE
TRGGMLQKMMTPFQYFAGGPIGTGLQCISWIHMDDEVNAIIASLDNSAYKGAINLVAPTP
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHEEECCCHHHHHHHHHCCCHHCCEEEEECCCC
VSMKEFASKLGAVMGRPSLLQVPEFAVKMLMGEGGEYAVRGQKVLPTFLEKQGFTFRYPD
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHCCCEEECCC
LSNALGDLIKHGK
HHHHHHHHHHCCC
>Mature Secondary Structure
MNNHIVITGATGVIGVELAQKLIKRGEKVVLLARSPNAAQQKIPGAAAYVRWDSDMQEGE
CCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCCEEEEEECCCCCCCC
WKSTISGAKAVIHLAGKPLLESRWNEEHKQECYQSRIIGTRHIVAAIAEAAEKPQVFISS
HHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEC
SAIGYYGSFDKCSDTAPLTESGNKGSDFLAHICIDWEEEARKAENLVPRLVFLRTGIVLS
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCEEEE
TRGGMLQKMMTPFQYFAGGPIGTGLQCISWIHMDDEVNAIIASLDNSAYKGAINLVAPTP
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHEEECCCHHHHHHHHHCCCHHCCEEEEECCCC
VSMKEFASKLGAVMGRPSLLQVPEFAVKMLMGEGGEYAVRGQKVLPTFLEKQGFTFRYPD
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHCCCEEECCC
LSNALGDLIKHGK
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]