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The map label for this gene is cmpR [H]

Identifier: 78067970

GI number: 78067970

Start: 3673982

End: 3674899

Strand: Direct

Name: cmpR [H]

Synonym: Bcep18194_A6501

Alternate gene names: 78067970

Gene position: 3673982-3674899 (Clockwise)

Preceding gene: 78067967

Following gene: 78067973

Centisome position: 99.45

GC content: 68.3

Gene sequence:

>918_bases
GTGTTCGATCAGCTGAAGGCGTTCCACGCGACCGTCCGGCAGGGCAGCATCACGCGCGCCGCGCGCCACCTGGGCGTGAG
CCAGCCGACGATTGCCGCGCAGATCCGGCAGGTCGAGCAGGTGTACGGTGTCGAGCTGTTCTACCGCAGCGGCCGCAAGC
TCGAGGTCACCGACACCGGCATCGAGCTGCTGCCGCTCGTCGAGAAGATGATCGCGCTCGAGGCGCAGGCCGACATCATG
CTGCGCAATGTCGGCGGCCTGTTCGAAGGCCACCTGCGGATCGGTGCGACGGGGCCGTACTACATCATGGACGCGGTCGG
CCGCTTCTCGAACGCGCATCCGTCGATCGCGCTCACGTGCCGGATCGGCAACTCCGAGGAAATCCTGCAGGCGCTGCAGG
AATTCCGCATCGACCTCGCCGTCTCGTCGCAGCGCAACGATGCCGACGGCCTCGAACGCAAGGTGATCTCGACCGACCCG
CTCGTGCTGGTCGTGCATCGCAACCATCCGCTCGCGCGTTTCGACGCGATCGATCCGGCGCAGCTCGCCGACGTGCGACT
GCTGATTCGCGAAGAAGGCTCGGTCACGCGCCGCTGCACGGAGACGATTCTCGAAACGGCCGGTGTCGCCGCCGTCTCGG
TGGCCGAGATCGGCAGCCGCGAAGCGATCCGCGAGGCGATCCTGCACAGCGTGGGCGGCAGCCTGTTTCCGCTCGGCGAG
GCCGAACGTCATCCGGATTTGCGCGTGATCGCGCTGCGCGGCGTCGACACGACGATCGACGAATACGTGTACTACCTGAA
AGCGCGCCGCCAGAGCCCGGCGATCGACGCGTTCCTCGCGTGCATCCTGCCGGCCGGCAGCGACGCGGCCGCGGCGGATG
AAGCCGGACGAACGGCGCGGCGGGCGAACGCGCGCTGA

Upstream 100 bases:

>100_bases
CCACAAGAATTTTTTCGAAGCGGCACACGACGCGTCTTTCATCCGGCCGACACACGCATGCGCTACGCTGACGCGCGATA
CAGAGGGGAGAAGCCGAGTC

Downstream 100 bases:

>100_bases
ACGGCCGCGCGTTCGCCGGTACCGCACATCAGTGGCGCTTTTCCCGCGCCTTCCCTCGTTTTTCCTCGTGCCTTCCTTCT
GTCGTTGCGCTCACATCACT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MFDQLKAFHATVRQGSITRAARHLGVSQPTIAAQIRQVEQVYGVELFYRSGRKLEVTDTGIELLPLVEKMIALEAQADIM
LRNVGGLFEGHLRIGATGPYYIMDAVGRFSNAHPSIALTCRIGNSEEILQALQEFRIDLAVSSQRNDADGLERKVISTDP
LVLVVHRNHPLARFDAIDPAQLADVRLLIREEGSVTRRCTETILETAGVAAVSVAEIGSREAIREAILHSVGGSLFPLGE
AERHPDLRVIALRGVDTTIDEYVYYLKARRQSPAIDAFLACILPAGSDAAAADEAGRTARRANAR

Sequences:

>Translated_305_residues
MFDQLKAFHATVRQGSITRAARHLGVSQPTIAAQIRQVEQVYGVELFYRSGRKLEVTDTGIELLPLVEKMIALEAQADIM
LRNVGGLFEGHLRIGATGPYYIMDAVGRFSNAHPSIALTCRIGNSEEILQALQEFRIDLAVSSQRNDADGLERKVISTDP
LVLVVHRNHPLARFDAIDPAQLADVRLLIREEGSVTRRCTETILETAGVAAVSVAEIGSREAIREAILHSVGGSLFPLGE
AERHPDLRVIALRGVDTTIDEYVYYLKARRQSPAIDAFLACILPAGSDAAAADEAGRTARRANAR
>Mature_305_residues
MFDQLKAFHATVRQGSITRAARHLGVSQPTIAAQIRQVEQVYGVELFYRSGRKLEVTDTGIELLPLVEKMIALEAQADIM
LRNVGGLFEGHLRIGATGPYYIMDAVGRFSNAHPSIALTCRIGNSEEILQALQEFRIDLAVSSQRNDADGLERKVISTDP
LVLVVHRNHPLARFDAIDPAQLADVRLLIREEGSVTRRCTETILETAGVAAVSVAEIGSREAIREAILHSVGGSLFPLGE
AERHPDLRVIALRGVDTTIDEYVYYLKARRQSPAIDAFLACILPAGSDAAAADEAGRTARRANAR

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=252, Percent_Identity=31.3492063492063, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788481, Length=237, Percent_Identity=29.957805907173, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082132, Length=289, Percent_Identity=24.9134948096886, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1790399, Length=222, Percent_Identity=24.7747747747748, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI145693105, Length=187, Percent_Identity=22.4598930481283, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787879, Length=289, Percent_Identity=24.2214532871972, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788748, Length=242, Percent_Identity=22.3140495867769, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87081904, Length=210, Percent_Identity=25.2380952380952, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788626, Length=268, Percent_Identity=26.1194029850746, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33300; Mature: 33300

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDQLKAFHATVRQGSITRAARHLGVSQPTIAAQIRQVEQVYGVELFYRSGRKLEVTDTG
CCCHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEECCCCEEEEECCC
IELLPLVEKMIALEAQADIMLRNVGGLFEGHLRIGATGPYYIMDAVGRFSNAHPSIALTC
HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCEEECCCCCHHHHHHHHHCCCCCCCEEEEE
RIGNSEEILQALQEFRIDLAVSSQRNDADGLERKVISTDPLVLVVHRNHPLARFDAIDPA
EECCHHHHHHHHHHHHEEEEECCCCCCCHHHHHHEECCCCEEEEEECCCCCHHCCCCCCH
QLADVRLLIREEGSVTRRCTETILETAGVAAVSVAEIGSREAIREAILHSVGGSLFPLGE
HHHHHEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCEEECCC
AERHPDLRVIALRGVDTTIDEYVYYLKARRQSPAIDAFLACILPAGSDAAAADEAGRTAR
CCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH
RANAR
HCCCC
>Mature Secondary Structure
MFDQLKAFHATVRQGSITRAARHLGVSQPTIAAQIRQVEQVYGVELFYRSGRKLEVTDTG
CCCHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEECCCCEEEEECCC
IELLPLVEKMIALEAQADIMLRNVGGLFEGHLRIGATGPYYIMDAVGRFSNAHPSIALTC
HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCEEECCCCCHHHHHHHHHCCCCCCCEEEEE
RIGNSEEILQALQEFRIDLAVSSQRNDADGLERKVISTDPLVLVVHRNHPLARFDAIDPA
EECCHHHHHHHHHHHHEEEEECCCCCCCHHHHHHEECCCCEEEEEECCCCCHHCCCCCCH
QLADVRLLIREEGSVTRRCTETILETAGVAAVSVAEIGSREAIREAILHSVGGSLFPLGE
HHHHHEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCEEECCC
AERHPDLRVIALRGVDTTIDEYVYYLKARRQSPAIDAFLACILPAGSDAAAADEAGRTAR
CCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH
RANAR
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA