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The map label for this gene is slmA

Identifier: 78067918

GI number: 78067918

Start: 3614304

End: 3614969

Strand: Direct

Name: slmA

Synonym: Bcep18194_A6449

Alternate gene names: 78067918

Gene position: 3614304-3614969 (Clockwise)

Preceding gene: 78067917

Following gene: 78067919

Centisome position: 97.84

GC content: 68.62

Gene sequence:

>666_bases
ATGCAGCCGACTTACCCGCAGGACCAAGCCGTAACGGAAAGCCAGGCCACACCGACTCGCGCGCGCCCGAAGCCGGGCGA
GCGCCGCGTGATGATCCTGCAGACGCTCGCGGCGATGCTCGAGGCGCCGAAACCCGAGAAAATCACGACGGCCGCGCTCG
CGGCCCGGCTCGACGTGTCGGAAGCCGCGCTGTACCGGCATTTCACCAGCAAGGCGAAGATGTACGAGGGGTTGATCGAG
TTCATCGAGCAGGCGCTGTTCGGGCTCGTGAACCAGATCGTCGCGAAGGAGCCGAACGGCGTGCAGCAGGCGCGCACGAT
CGCGCTGACGATGCTCAACTTCGCCGCGAAGAACCCCGGCATGACACGCGTGCTGACCGGGGAAGCGCTGGTCGGCGAGG
ACGAGCGGCTGACCGAGCGCGTGAACCAGCTGCTCGACCGCATCGAGGCGACCGTCAAGCAATGCCTGCGCGTCGCGCGC
ACGGAGGCGAACGCGCCGCCGGACGGCGCGACGCCGTTCGTGCTGCCGGCCGACTACGATCCGGCCGCCCGGGCGAGCCT
GCTCGTCAGCTACGTGATCGGCCGATGGCACCGCTTCGCGAAGGGCGGGTTCCAGAAACCGCCGGGCGAGCAGGCCGACG
CGCATTTGCGGCTGATCCTTCAGTGA

Upstream 100 bases:

>100_bases
TGCCCGGCCATTTGCCGACCACCGGTCGCCCGCACTATGTCGATCATCGCATTCGTTCGCTAAAATCGCTCCGACTGGGC
ACACGATCGGGGCGACAAAA

Downstream 100 bases:

>100_bases
GATGGCGCGGGCGCTGCGGCCCCGCCCGCGCGCCCGAATCCGCGCTCCCCAATTTCCGCTATACTTTGCCGACTGTCGCC
CCTCGGGCGGCAGCCAGAAA

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MQPTYPQDQAVTESQATPTRARPKPGERRVMILQTLAAMLEAPKPEKITTAALAARLDVSEAALYRHFTSKAKMYEGLIE
FIEQALFGLVNQIVAKEPNGVQQARTIALTMLNFAAKNPGMTRVLTGEALVGEDERLTERVNQLLDRIEATVKQCLRVAR
TEANAPPDGATPFVLPADYDPAARASLLVSYVIGRWHRFAKGGFQKPPGEQADAHLRLILQ

Sequences:

>Translated_221_residues
MQPTYPQDQAVTESQATPTRARPKPGERRVMILQTLAAMLEAPKPEKITTAALAARLDVSEAALYRHFTSKAKMYEGLIE
FIEQALFGLVNQIVAKEPNGVQQARTIALTMLNFAAKNPGMTRVLTGEALVGEDERLTERVNQLLDRIEATVKQCLRVAR
TEANAPPDGATPFVLPADYDPAARASLLVSYVIGRWHRFAKGGFQKPPGEQADAHLRLILQ
>Mature_221_residues
MQPTYPQDQAVTESQATPTRARPKPGERRVMILQTLAAMLEAPKPEKITTAALAARLDVSEAALYRHFTSKAKMYEGLIE
FIEQALFGLVNQIVAKEPNGVQQARTIALTMLNFAAKNPGMTRVLTGEALVGEDERLTERVNQLLDRIEATVKQCLRVAR
TEANAPPDGATPFVLPADYDPAARASLLVSYVIGRWHRFAKGGFQKPPGEQADAHLRLILQ

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082302, Length=193, Percent_Identity=43.5233160621762, Blast_Score=135, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24329; Mature: 24329

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPTYPQDQAVTESQATPTRARPKPGERRVMILQTLAAMLEAPKPEKITTAALAARLDVS
CCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
EAALYRHFTSKAKMYEGLIEFIEQALFGLVNQIVAKEPNGVQQARTIALTMLNFAAKNPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
MTRVLTGEALVGEDERLTERVNQLLDRIEATVKQCLRVARTEANAPPDGATPFVLPADYD
CEEEEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCC
PAARASLLVSYVIGRWHRFAKGGFQKPPGEQADAHLRLILQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC
>Mature Secondary Structure
MQPTYPQDQAVTESQATPTRARPKPGERRVMILQTLAAMLEAPKPEKITTAALAARLDVS
CCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
EAALYRHFTSKAKMYEGLIEFIEQALFGLVNQIVAKEPNGVQQARTIALTMLNFAAKNPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
MTRVLTGEALVGEDERLTERVNQLLDRIEATVKQCLRVARTEANAPPDGATPFVLPADYD
CEEEEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCC
PAARASLLVSYVIGRWHRFAKGGFQKPPGEQADAHLRLILQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA