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The map label for this gene is yddM [C]

Identifier: 78067902

GI number: 78067902

Start: 3600331

End: 3600633

Strand: Reverse

Name: yddM [C]

Synonym: Bcep18194_A6433

Alternate gene names: 78067902

Gene position: 3600633-3600331 (Counterclockwise)

Preceding gene: 78067903

Following gene: 78067900

Centisome position: 97.47

GC content: 66.67

Gene sequence:

>303_bases
ATGACTCGCATCTTCAATCCGCCGCACCCAGGCGAAGCGCTGCGCGACGACGTGCTGCCGGCATTCGGCCTGACTGTCAC
CGAGGCCGCGGCGCAACTCGGCGTCACGCGTGCGGCGTTATCGCGCATTCTGCATGGTCATGCGGGGATTTCGCCGGAAA
TGGCGTTGCGCATCGAGGCGTGGCTCGGCGAGGAGAACGGCGGTCGCGCGGATCTTTGGCTCGCGCAGCAATCCGCTTAC
GACTTGTGGCAGGCACGCGCGAAAGGCGTGCCCAAGGTAGCGAGAGCGCGGGCACGCACGTGA

Upstream 100 bases:

>100_bases
GCGGTGAGCGTGAGCAGCAACTGGCGTCTGACGTTCAGTTTCGAGGGCGCCGATGCCGTCCTGGTCGATTACCAGGACTA
CCACTGAGGTGATTCAAGCC

Downstream 100 bases:

>100_bases
CCGCGCGCCCGCGAGCATGGCTCAGTACAGGCTCGGCTCACCGGCCGGGCGCGTCTTGAAGCGCTTGTGGACCCAATAGT
ATTGCTCGGGCATCAGCGGG

Product: XRE family plasmid maintenance system antidote protein

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MTRIFNPPHPGEALRDDVLPAFGLTVTEAAAQLGVTRAALSRILHGHAGISPEMALRIEAWLGEENGGRADLWLAQQSAY
DLWQARAKGVPKVARARART

Sequences:

>Translated_100_residues
MTRIFNPPHPGEALRDDVLPAFGLTVTEAAAQLGVTRAALSRILHGHAGISPEMALRIEAWLGEENGGRADLWLAQQSAY
DLWQARAKGVPKVARARART
>Mature_99_residues
TRIFNPPHPGEALRDDVLPAFGLTVTEAAAQLGVTRAALSRILHGHAGISPEMALRIEAWLGEENGGRADLWLAQQSAYD
LWQARAKGVPKVARARART

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 10838; Mature: 10706

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRIFNPPHPGEALRDDVLPAFGLTVTEAAAQLGVTRAALSRILHGHAGISPEMALRIEA
CCCCCCCCCCCHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEHE
WLGEENGGRADLWLAQQSAYDLWQARAKGVPKVARARART
ECCCCCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHCCCC
>Mature Secondary Structure 
TRIFNPPHPGEALRDDVLPAFGLTVTEAAAQLGVTRAALSRILHGHAGISPEMALRIEA
CCCCCCCCCCHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEHE
WLGEENGGRADLWLAQQSAYDLWQARAKGVPKVARARART
ECCCCCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7937823 [H]